Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGCDOGHO_48 | 135422 | 137347 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PGCDOGHO_64 | 125513 | 126403 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| PGCDOGHO_14 | 2000 | 2800 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| PGCDOGHO_14 | 651 | 1787 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PGCDOGHO_14 | 2000 | 2800 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| PGCDOGHO_48 | 135422 | 137347 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PGCDOGHO_14 | 621 | 1787 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGCDOGHO_64 | 125513 | 126400 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| PGCDOGHO_14 | 2003 | 2800 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| PGCDOGHO_48 | 135425 | 137347 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PGCDOGHO_14 | 621 | 1784 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.48 | 100.00 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGCDOGHO_1 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_2 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_3 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_4 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_5 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_6 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_7 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_8 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_9 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_10 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_12 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_13 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_14 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_15 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_16 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_17 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_18 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_19 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_20 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_22 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_23 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_24 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_25 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_26 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_27 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_28 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_29 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_30 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_31 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_32 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_33 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_35 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_36 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_37 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_38 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_39 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_40 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_41 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_43 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_44 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_45 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_46 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_47 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_48 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_49 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_50 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_51 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_52 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_53 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_54 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_55 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_56 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_57 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_58 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_59 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_60 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_61 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_62 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_64 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_65 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_66 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_67 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_69 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_70 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_71 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_73 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_74 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_75 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_79 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_80 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_81 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_82 | 0.0 | 1.0 | 0.0 |
| PGCDOGHO_83 | 1.0 | 0.0 | 1.0 |
| PGCDOGHO_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGCDOGHO_31 | 26932 | 31340 | True | Unknown | VOG0275, |
| PGCDOGHO_31 | 100309 | 102108 | False | Myoviridae | VOG4443, |
| PGCDOGHO_36 | 94189 | 102705 | False | Unknown | VOG5821, |
Phigaro v2.4.0 (Database: Jan. 2024 release)