Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIAKINOE_77 | 1997 | 2797 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| GIAKINOE_77 | 648 | 1784 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GIAKINOE_77 | 1997 | 2797 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| GIAKINOE_77 | 618 | 1784 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIAKINOE_77 | 2000 | 2797 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| GIAKINOE_77 | 618 | 1781 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.48 | 100.00 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIAKINOE_1 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_2 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_3 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_4 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_5 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_6 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_8 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_9 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_10 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_11 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_12 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_13 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_14 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_15 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_16 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_17 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_18 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_19 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_20 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_21 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_22 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_24 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_25 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_26 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_28 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_29 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_30 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_32 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_33 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_35 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_36 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_37 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_38 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_39 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_40 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_41 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_42 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_43 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_44 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_45 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_46 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_47 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_48 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_49 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_50 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_51 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_52 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_53 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_54 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_56 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_57 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_58 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_59 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_60 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_61 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_62 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_65 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_66 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_67 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_68 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_69 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_70 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_71 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_72 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_73 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_74 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_76 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_77 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_78 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_79 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_80 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_81 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_83 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_84 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_85 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_86 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_87 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_88 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_89 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_90 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_92 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_93 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_94 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_95 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_96 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_97 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_98 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_99 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_100 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_101 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_102 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_103 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_104 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_105 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_106 | 1.0 | 0.0 | 1.0 |
| GIAKINOE_107 | 0.0 | 1.0 | 0.0 |
| GIAKINOE_108 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GIAKINOE_1 | 4805 | 13552 | False | Unknown | VOG0572, |
| GIAKINOE_65 | 100638 | 109054 | False | Unknown | VOG4573, |
| GIAKINOE_102 | 9689 | 14875 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)