Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FPJHEGFM_57 | 32791 | 33942 | tufA | 0.0 | elongation factor Tu | 85.94 | 97.21 | AHM69299 |
| FPJHEGFM_99 | 64909 | 66414 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| FPJHEGFM_69 | 4540 | 5409 | pdxS | 1.58e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| FPJHEGFM_60 | 196723 | 195947 | CodY | 4.83e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| FPJHEGFM_60 | 196723 | 195947 | codY | 1.56e-124 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| FPJHEGFM_103 | 720 | 1289 | ClpP | 3.24e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| FPJHEGFM_5 | 38184 | 38870 | WalR | 5.75e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| FPJHEGFM_91 | 26396 | 26788 | spxA1 | 7.56e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| FPJHEGFM_91 | 26396 | 26788 | spx | 1.64e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| FPJHEGFM_26 | 18856 | 19098 | SpoVG | 8.29e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| FPJHEGFM_53 | 14564 | 14761 | CspA | 4.24e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| FPJHEGFM_60 | 84363 | 84557 | CspD | 4.33e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| FPJHEGFM_60 | 84363 | 84560 | CspB | 2.91e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FPJHEGFM_1 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_2 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_3 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_4 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_5 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_6 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_7 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_8 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_9 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_11 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_12 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_14 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_15 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_16 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_17 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_20 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_22 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_23 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_24 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_25 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_26 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_28 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_29 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_30 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_31 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_32 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_33 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_34 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_37 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_38 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_39 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_41 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_43 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_44 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_46 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_47 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_48 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_49 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_51 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_53 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_54 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_55 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_56 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_57 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_58 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_59 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_60 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_61 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_62 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_63 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_65 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_67 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_68 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_69 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_71 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_72 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_73 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_75 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_76 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_77 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_78 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_79 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_80 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_81 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_82 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_83 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_85 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_86 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_87 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_88 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_89 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_90 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_91 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_92 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_93 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_94 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_95 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_96 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_97 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_98 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_99 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_100 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_101 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_102 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_103 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_104 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_105 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_106 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_107 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_108 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_109 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_111 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_112 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_113 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_114 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_115 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_116 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_118 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_119 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_120 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_121 | 0.0 | 1.0 | 0.0 |
| FPJHEGFM_122 | 1.0 | 0.0 | 1.0 |
| FPJHEGFM_124 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FPJHEGFM_88 | 8597 | 43979 | False | Myoviridae | VOG4615, VOG0312, VOG8580, VOG3390, VOG10264, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG4545, VOG3892, VOG3891, VOG3890, VOG11074, VOG3676, VOG4555, VOG0692, VOG0720, VOG5023, VOG0275, VOG5461, VOG3699, VOG2124, VOG4571, VOG6832, VOG0195, VOG8653, VOG4567, VOG0020, VOG4059, VOG4561 |
| FPJHEGFM_88 | 54955 | 61727 | False | Siphoviridae | VOG5753, VOG7255, VOG4551, VOG0025, VOG0189 |
Phigaro v2.4.0 (Database: Jan. 2024 release)