Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 8 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KPIFLIGA_149 | 31760 | 32911 | tufA | 0.0 | elongation factor Tu | 86.46 | 97.21 | AHM69299 |
| KPIFLIGA_67 | 4928 | 5797 | pdxS | 1.29e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| KPIFLIGA_3 | 27680 | 28456 | CodY | 4.86e-127 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KPIFLIGA_184 | 23031 | 23600 | ClpP | 1.79e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| KPIFLIGA_102 | 6922 | 7314 | spxA1 | 2.10e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| KPIFLIGA_102 | 6922 | 7314 | spx | 4.54e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| KPIFLIGA_93 | 1116 | 874 | SpoVG | 6.05e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| KPIFLIGA_41 | 2139 | 1942 | CspA | 9.61e-32 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| KPIFLIGA_70 | 8128 | 8322 | CspD | 5.87e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| KPIFLIGA_70 | 8128 | 8325 | CspB | 3.95e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| KPIFLIGA_41 | 2139 | 1945 | CspR | 1.78e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KPIFLIGA_158 | 10526 | 10693 | Col(SD853) | 168 / 194 | 86.90 | NC015392 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KPIFLIGA_1 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_2 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_3 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_4 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_5 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_6 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_7 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_8 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_9 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_10 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_11 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_12 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_13 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_14 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_15 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_16 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_17 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_18 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_19 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_20 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_21 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_22 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_23 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_24 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_25 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_26 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_27 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_28 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_29 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_30 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_31 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_32 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_33 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_34 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_35 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_36 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_37 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_38 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_39 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_40 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_41 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_42 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_43 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_44 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_45 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_46 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_47 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_48 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_49 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_50 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_51 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_53 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_54 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_55 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_56 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_57 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_58 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_59 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_60 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_61 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_62 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_64 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_65 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_66 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_67 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_68 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_69 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_70 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_71 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_72 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_73 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_74 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_75 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_76 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_77 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_78 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_79 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_80 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_81 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_83 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_84 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_85 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_86 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_87 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_88 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_89 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_90 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_91 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_92 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_93 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_94 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_95 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_97 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_98 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_100 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_101 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_102 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_105 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_106 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_107 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_108 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_109 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_110 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_111 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_112 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_113 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_116 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_120 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_122 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_124 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_125 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_127 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_128 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_129 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_130 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_132 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_134 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_135 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_136 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_137 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_139 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_140 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_141 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_142 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_143 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_145 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_147 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_148 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_149 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_150 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_151 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_152 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_153 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_155 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_156 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_158 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_160 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_161 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_162 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_163 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_164 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_165 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_167 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_168 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_169 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_170 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_171 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_172 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_173 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_174 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_175 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_176 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_177 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_178 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_180 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_181 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_182 | 1.0 | 0.0 | 1.0 |
| KPIFLIGA_183 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_184 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_185 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_186 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_187 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_188 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_189 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_190 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_191 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_192 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_193 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_194 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_195 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_196 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_197 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_198 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_199 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_201 | 0.0 | 1.0 | 0.0 |
| KPIFLIGA_202 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KPIFLIGA_97 | 3597 | 36654 | False | Siphoviridae | VOG8439, VOG10972, VOG4599, VOG4605, VOG8263, VOG0701, VOG10044, VOG6548, VOG0697, VOG0696, VOG0695, VOG5007, VOG4572, VOG9317, VOG1183, VOG0692, VOG0691, VOG10227, VOG0796, VOG0198, VOG8445, VOG6440, VOG0536, VOG9996, VOG0189, VOG4799, VOG1309, VOG4600, VOG1878, VOG3549, VOG8241, VOG4552, VOG9667, VOG9667 |
| KPIFLIGA_112 | 3483 | 35105 | False | Siphoviridae | VOG8438, VOG3462, VOG0801, VOG6163, VOG5852, VOG4586, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4581, VOG4841, VOG3477, VOG0275, VOG0198, VOG4552, VOG4567, VOG0226, VOG8647, VOG1878, VOG0181, VOG6495, VOG6495, VOG9667, VOG0982, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)