Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 8 | 8.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CENDFBJE_55 | 3840 | 4331 | lnu(D) | lincosamide nucleotidyltransferase Lnu(D) | BLASTX | 81.71 | 100.00 | WP_063851342.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CENDFBJE_48 | 48335 | 49486 | tufA | 0.0 | elongation factor Tu | 85.68 | 97.21 | AHM69299 |
| CENDFBJE_48 | 4987 | 5856 | pdxS | 7.39e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| CENDFBJE_50 | 108332 | 107556 | CodY | 8.32e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| CENDFBJE_50 | 108332 | 107556 | codY | 2.35e-124 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| CENDFBJE_91 | 36132 | 35563 | ClpP | 4.86e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| CENDFBJE_18 | 14809 | 15201 | spxA1 | 2.86e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| CENDFBJE_18 | 14809 | 15201 | spx | 6.19e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| CENDFBJE_1 | 17107 | 17349 | SpoVG | 4.23e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| CENDFBJE_117 | 8651 | 8845 | CspA | 3.85e-30 | cold shock protein | 81.54 | 98.48 | CAA62903 |
| CENDFBJE_50 | 2793 | 2987 | CspD | 3.18e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| CENDFBJE_50 | 2793 | 2990 | CspB | 2.14e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CENDFBJE_1 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_2 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_3 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_4 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_6 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_7 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_8 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_9 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_11 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_12 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_14 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_15 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_16 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_18 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_19 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_21 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_22 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_24 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_25 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_26 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_28 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_29 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_31 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_32 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_33 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_36 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_37 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_38 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_39 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_41 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_44 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_45 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_46 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_48 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_49 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_50 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_51 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_52 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_53 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_54 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_55 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_56 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_57 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_58 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_60 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_62 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_63 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_64 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_65 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_66 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_67 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_68 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_69 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_71 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_72 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_74 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_76 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_77 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_78 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_79 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_80 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_81 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_82 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_83 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_84 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_85 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_86 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_87 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_88 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_89 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_91 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_93 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_94 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_95 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_96 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_98 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_99 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_101 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_103 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_104 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_105 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_106 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_107 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_108 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_109 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_110 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_111 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_112 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_113 | 1.0 | 0.0 | 1.0 |
| CENDFBJE_114 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_115 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_116 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_117 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_119 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_120 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_121 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_122 | 0.0 | 1.0 | 0.0 |
| CENDFBJE_123 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CENDFBJE_62 | 4727 | 36356 | False | Siphoviridae | VOG8197, VOG4612, VOG6391, VOG4599, VOG4605, VOG6163, VOG5852, VOG4586, VOG0704, VOG1900, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG0198, VOG0397, VOG6581, VOG10470, VOG1297, VOG0044, VOG3798, VOG10041, VOG8542, VOG0536, VOG0226, VOG0598, VOG1884, VOG0025, VOG4799 |
Phigaro v2.4.0 (Database: Jan. 2024 release)