Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CKPMFJPG_133 | 43835 | 42657 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| CKPMFJPG_127 | 58816 | 60321 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| CKPMFJPG_70 | 4540 | 5409 | pdxS | 7.08e-154 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| CKPMFJPG_69 | 56796 | 57572 | CodY | 2.90e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| CKPMFJPG_69 | 56796 | 57572 | codY | 1.40e-124 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| CKPMFJPG_37 | 655 | 1224 | ClpP | 5.90e-105 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| CKPMFJPG_120 | 7936 | 7250 | WalR | 1.00e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| CKPMFJPG_115 | 4814 | 4422 | spxA1 | 8.28e-74 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| CKPMFJPG_115 | 4814 | 4422 | spx | 1.79e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| CKPMFJPG_31 | 446 | 204 | SpoVG | 2.71e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| CKPMFJPG_20 | 13626 | 13429 | CspA | 1.98e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| CKPMFJPG_69 | 169136 | 168942 | CspD | 3.28e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| CKPMFJPG_69 | 169136 | 168939 | CspB | 2.20e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| CKPMFJPG_20 | 13626 | 13432 | CspR | 3.67e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CKPMFJPG_1 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_2 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_3 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_4 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_5 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_6 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_7 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_8 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_9 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_10 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_11 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_12 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_13 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_15 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_16 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_17 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_18 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_19 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_20 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_21 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_22 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_23 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_24 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_25 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_26 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_27 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_28 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_29 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_30 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_31 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_32 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_33 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_34 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_35 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_36 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_37 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_38 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_39 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_40 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_41 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_42 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_43 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_44 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_45 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_46 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_47 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_48 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_49 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_50 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_51 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_52 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_53 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_54 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_55 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_56 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_57 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_58 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_59 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_60 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_62 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_63 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_64 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_66 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_67 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_68 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_69 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_70 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_72 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_73 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_74 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_75 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_76 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_77 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_78 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_80 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_82 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_83 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_84 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_85 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_87 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_88 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_91 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_93 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_95 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_96 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_97 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_98 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_99 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_100 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_101 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_105 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_108 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_109 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_110 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_114 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_115 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_116 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_117 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_118 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_119 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_120 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_121 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_123 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_125 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_127 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_129 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_131 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_132 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_133 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_135 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_136 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_137 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_138 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_139 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_140 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_141 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_143 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_146 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_148 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_149 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_150 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_151 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_152 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_154 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_155 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_156 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_157 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_158 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_159 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_160 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_161 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_162 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_163 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_164 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_165 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_167 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_168 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_169 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_170 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_171 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_172 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_173 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_174 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_175 | 1.0 | 0.0 | 1.0 |
| CKPMFJPG_177 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_178 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_179 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_180 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_181 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_182 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_183 | 0.0 | 1.0 | 0.0 |
| CKPMFJPG_184 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)