Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
CCLJNAFE_1168169168873WalR3.43e-114transcriptional regulatory protein84.25100.00EPH95667
CCLJNAFE_45266374266180CspR1.21e-29cold shock protein84.6198.48AAO82613
CCLJNAFE_45266374266177CspA1.85e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
CCLJNAFE_4711472082rep28937 / 93696.58CP005948
CCLJNAFE_3534604028rep38571 / 90381.44CP005943

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
CCLJNAFE_10.01.00.0
CCLJNAFE_20.01.00.0
CCLJNAFE_130.01.00.0
CCLJNAFE_240.01.00.0
CCLJNAFE_270.01.00.0
CCLJNAFE_280.01.00.0
CCLJNAFE_290.01.00.0
CCLJNAFE_300.01.00.0
CCLJNAFE_310.01.00.0
CCLJNAFE_320.01.00.0
CCLJNAFE_331.00.01.0
CCLJNAFE_340.01.00.0
CCLJNAFE_351.00.01.0
CCLJNAFE_361.00.01.0
CCLJNAFE_370.01.00.0
CCLJNAFE_381.00.01.0
CCLJNAFE_391.00.01.0
CCLJNAFE_401.00.01.0
CCLJNAFE_411.00.01.0
CCLJNAFE_420.01.00.0
CCLJNAFE_430.01.00.0
CCLJNAFE_441.00.01.0
CCLJNAFE_450.01.00.0
CCLJNAFE_460.01.00.0
CCLJNAFE_471.00.01.0
CCLJNAFE_481.00.01.0
CCLJNAFE_491.00.01.0
CCLJNAFE_501.00.01.0
CCLJNAFE_511.00.01.0
CCLJNAFE_521.00.01.0
CCLJNAFE_531.00.01.0
CCLJNAFE_540.01.00.0
CCLJNAFE_550.01.00.0
CCLJNAFE_560.01.00.0
CCLJNAFE_571.00.01.0
CCLJNAFE_581.00.01.0
CCLJNAFE_591.00.01.0
CCLJNAFE_601.00.01.0
CCLJNAFE_621.00.01.0
CCLJNAFE_630.01.00.0
CCLJNAFE_641.00.01.0
CCLJNAFE_651.00.01.0
CCLJNAFE_661.00.01.0
CCLJNAFE_670.01.00.0
CCLJNAFE_681.00.01.0
CCLJNAFE_691.00.01.0
CCLJNAFE_701.00.01.0
CCLJNAFE_711.00.01.0
CCLJNAFE_721.00.01.0
CCLJNAFE_731.00.01.0
CCLJNAFE_741.00.01.0
CCLJNAFE_751.00.01.0
CCLJNAFE_761.00.01.0
CCLJNAFE_780.01.00.0
CCLJNAFE_791.00.01.0
CCLJNAFE_801.00.01.0
CCLJNAFE_811.00.01.0
CCLJNAFE_821.00.01.0
CCLJNAFE_830.01.00.0
CCLJNAFE_841.00.01.0
CCLJNAFE_851.00.01.0
CCLJNAFE_861.00.01.0
CCLJNAFE_871.00.01.0
CCLJNAFE_880.01.00.0
CCLJNAFE_890.01.00.0
CCLJNAFE_900.01.00.0
CCLJNAFE_911.00.01.0
CCLJNAFE_921.00.01.0
CCLJNAFE_1000.01.00.0
CCLJNAFE_1110.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
CCLJNAFE_297553123100FalseSiphoviridaeVOG0054, VOG1637, VOG8294, VOG6540, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG1329, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG5616, VOG0198, VOG4567, VOG0586
CCLJNAFE_2142076149302FalseSiphoviridaeVOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841
CCLJNAFE_13129295143111FalseSiphoviridaeVOG4615, VOG6540, VOG9805, VOG7548, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724
CCLJNAFE_243102738561FalseSiphoviridaeVOG0321, VOG10904, VOG4548, VOG6394, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327
CCLJNAFE_244034263148FalseSiphoviridaeVOG3307, VOG4673, VOG5495, VOG6154, VOG5278, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888
CCLJNAFE_304458450887FalseSiphoviridaeVOG4602, VOG6495, VOG9667, VOG1250, VOG0535, VOG0322, VOG6545, VOG5046
CCLJNAFE_56232720263433FalseSiphoviridaeVOG1191, VOG1521, VOG0054, VOG0753, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904, VOG4841, VOG0198, VOG9671
CCLJNAFE_78220400234882FalseSiphoviridaeVOG0054, VOG0753, VOG4918, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4599, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements