Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 4 | 16.88 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KJLEAHKL_1 | 3869733 | 3870653 | mphK | ARO:3004541 | mphK | 98.02 | 100.00 | CP010314.1 |
| KJLEAHKL_1 | 3856409 | 3857842 | lmrB | ARO:3002813 | lmrB | 100.00 | 100.00 | JYFL01000006.1 |
| KJLEAHKL_1 | 3806696 | 3807289 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| KJLEAHKL_1 | 3556835 | 3558478 | vmlR | ARO:3004476 | vmlR | 98.35 | 100.00 | NC_000964.3 |
| KJLEAHKL_1 | 3259740 | 3262310 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| KJLEAHKL_1 | 2796270 | 2796608 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| KJLEAHKL_1 | 2795953 | 2796270 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| KJLEAHKL_1 | 1676405 | 1677574 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
| KJLEAHKL_1 | 1505309 | 1506511 | blt | ARO:3003006 | blt | 99.50 | 100.00 | L32599.1 |
| KJLEAHKL_1 | 1487300 | 1488154 | aadK | ARO:3002627 | aadK | 98.94 | 100.00 | AL009126.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KJLEAHKL_1 | 1487300 | 1488152 | aadK | Streptomycin | 98.94 | 99.77 | M26879 |
| KJLEAHKL_1 | 29996 | 31372 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 98.91 | 100.00 | D12567 |
| KJLEAHKL_1 | 3869733 | 3870653 | mph(K) | Spiramycin, Telithromycin | 97.61 | 99.89 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KJLEAHKL_1 | 1487300 | 1488151 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.94 | 100.00 | WP_003229862.1 |
| KJLEAHKL_1 | 29996 | 31369 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.91 | 100.00 | WP_063856081.1 |
| KJLEAHKL_1 | 3556835 | 3558475 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.35 | 100.00 | WP_003234144.1 |
| KJLEAHKL_1 | 3869745 | 3870653 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.02 | 99.02 | WP_003246254.1 |
| KJLEAHKL_1 | 33325 | 33843 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| KJLEAHKL_1 | 2113876 | 2116473 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.83 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KJLEAHKL_1 | 931430 | 932215 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391080 |
| KJLEAHKL_1 | 935111 | 936049 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.89 | 100.00 | NP_391077 |
| KJLEAHKL_1 | 516250 | 517431 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| KJLEAHKL_1 | 936069 | 943203 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.75 | 99.97 | NP_391076 |
| KJLEAHKL_1 | 517446 | 517895 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| KJLEAHKL_1 | 933466 | 935083 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.51 | 99.88 | NP_391078 |
| KJLEAHKL_1 | 2164008 | 2165771 | dep/capD | 0.0 | Capsule | Immune modulation | 99.38 | 100.00 | NP_389723 |
| KJLEAHKL_1 | 932241 | 933437 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.25 | 100.00 | NP_391079 |
| KJLEAHKL_1 | 1876857 | 1877498 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.22 | 100.00 | NP_390062 |
| KJLEAHKL_1 | 517914 | 519056 | capA | 0.0 | Capsule | Immune modulation | 99.21 | 100.00 | NP_391469 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KJLEAHKL_1 | 4011666 | 4010530 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| KJLEAHKL_1 | 4125378 | 4124509 | pdxS | 2.28e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| KJLEAHKL_1 | 2483057 | 2482281 | CodY | 3.36e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KJLEAHKL_1 | 676604 | 676035 | ClpP | 2.49e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KJLEAHKL_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KJLEAHKL_1 | 1914716 | 1935041 | False | Siphoviridae | VOG8440, VOG5070, VOG9712, VOG5042, VOG3389, VOG4910, VOG0348, VOG9312, VOG8465, VOG0275, VOG7930, VOG8610, VOG7895, VOG3390, VOG7718 |
| KJLEAHKL_1 | 2826092 | 2853062 | False | Myoviridae | VOG0753, VOG4705, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG0749, VOG4685, VOG4773, VOG10227, VOG0796, VOG5447, VOG4861, VOG0189, VOG3490 |
Phigaro v2.4.0 (Database: Jan. 2024 release)