Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LJEPBJKG_12 | 176804 | 177508 | WalR | 1.22e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LJEPBJKG_35 | 14007 | 13813 | CspR | 9.22e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LJEPBJKG_35 | 14007 | 13810 | CspA | 1.41e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LJEPBJKG_47 | 1 | 633 | rep28 | 633 / 936 | 100.00 | CP005948 |
| LJEPBJKG_69 | 1002 | 1500 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJEPBJKG_1 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_2 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_3 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_4 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_5 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_6 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_7 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_8 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_9 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_10 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_11 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_12 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_13 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_14 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_15 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_16 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_17 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_18 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_19 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_20 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_21 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_22 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_23 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_24 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_25 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_26 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_27 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_28 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_29 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_30 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_31 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_32 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_33 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_34 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_35 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_36 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_37 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_38 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_39 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_40 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_41 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_42 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_43 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_44 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_45 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_46 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_47 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_48 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_49 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_50 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_51 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_52 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_53 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_54 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_55 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_56 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_57 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_58 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_59 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_60 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_61 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_63 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_64 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_65 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_66 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_67 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_68 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_69 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_70 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_71 | 1.0 | 0.0 | 1.0 |
| LJEPBJKG_78 | 0.0 | 1.0 | 0.0 |
| LJEPBJKG_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LJEPBJKG_19 | 5748 | 28507 | False | Siphoviridae | VOG4599, VOG4856, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG0045, VOG1183 |
| LJEPBJKG_21 | 1964 | 26939 | False | Siphoviridae | VOG6540, VOG9998, VOG0254, VOG8870, VOG10957, VOG4599, VOG4605, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| LJEPBJKG_31 | 12730 | 23646 | False | Siphoviridae | VOG0198, VOG0204, VOG4553, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609 |
| LJEPBJKG_78 | 23848 | 55999 | False | Siphoviridae | VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG7168, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4673, VOG0044, VOG0044, VOG0195, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG10904, VOG0321, VOG3307 |
Phigaro v2.4.0 (Database: Jan. 2024 release)