Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
APDEHJFN_23264909265613WalR2.36e-114transcriptional regulatory protein84.25100.00EPH95667
APDEHJFN_291400913815CspR9.21e-31cold shock protein84.6198.48AAO82613
APDEHJFN_291400913812CspA1.41e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
APDEHJFN_4112332135rep38903 / 90399.56CP005943
APDEHJFN_547981751repUS64954 / 95497.90JN601038

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
APDEHJFN_10.01.00.0
APDEHJFN_20.01.00.0
APDEHJFN_30.01.00.0
APDEHJFN_40.01.00.0
APDEHJFN_50.01.00.0
APDEHJFN_60.01.00.0
APDEHJFN_70.01.00.0
APDEHJFN_80.01.00.0
APDEHJFN_90.01.00.0
APDEHJFN_100.01.00.0
APDEHJFN_110.01.00.0
APDEHJFN_120.01.00.0
APDEHJFN_130.01.00.0
APDEHJFN_140.01.00.0
APDEHJFN_150.01.00.0
APDEHJFN_160.01.00.0
APDEHJFN_170.01.00.0
APDEHJFN_180.01.00.0
APDEHJFN_190.01.00.0
APDEHJFN_200.01.00.0
APDEHJFN_210.01.00.0
APDEHJFN_220.01.00.0
APDEHJFN_230.01.00.0
APDEHJFN_240.01.00.0
APDEHJFN_250.01.00.0
APDEHJFN_260.01.00.0
APDEHJFN_270.01.00.0
APDEHJFN_280.01.00.0
APDEHJFN_290.01.00.0
APDEHJFN_301.00.01.0
APDEHJFN_310.01.00.0
APDEHJFN_320.01.00.0
APDEHJFN_331.00.01.0
APDEHJFN_340.01.00.0
APDEHJFN_350.01.00.0
APDEHJFN_361.00.01.0
APDEHJFN_371.00.01.0
APDEHJFN_381.00.01.0
APDEHJFN_391.00.01.0
APDEHJFN_401.00.01.0
APDEHJFN_411.00.01.0
APDEHJFN_421.00.01.0
APDEHJFN_431.00.01.0
APDEHJFN_441.00.01.0
APDEHJFN_450.01.00.0
APDEHJFN_471.00.01.0
APDEHJFN_481.00.01.0
APDEHJFN_491.00.01.0
APDEHJFN_501.00.01.0
APDEHJFN_511.00.01.0
APDEHJFN_521.00.01.0
APDEHJFN_531.00.01.0
APDEHJFN_541.00.01.0
APDEHJFN_551.00.01.0
APDEHJFN_560.01.00.0
APDEHJFN_571.00.01.0
APDEHJFN_581.00.01.0
APDEHJFN_590.01.00.0
APDEHJFN_600.01.00.0
APDEHJFN_611.00.01.0
APDEHJFN_641.00.01.0
APDEHJFN_670.01.00.0
APDEHJFN_750.01.00.0
APDEHJFN_760.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
APDEHJFN_4540224748FalseSiphoviridaeVOG4605, VOG6163, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG0468, VOG0741, VOG4841, VOG0198, VOG1049, VOG3643
APDEHJFN_142162447119FalseSiphoviridaeVOG1637, VOG8294, VOG6540, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG0638, VOG0198, VOG2602

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements