Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OKIBEPOP_11 | 182357 | 181653 | WalR | 2.43e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| OKIBEPOP_12 | 201498 | 201692 | CspR | 2.55e-29 | cold shock protein | 83.08 | 98.48 | AAO82613 |
| OKIBEPOP_12 | 201498 | 201695 | CspA | 4.02e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OKIBEPOP_9 | 8208 | 9237 | rep38 | 1038 / 1104 | 81.79 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OKIBEPOP_1 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_2 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_4 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_5 | 1.0 | 0.0 | 1.0 |
| OKIBEPOP_6 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_7 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_9 | 1.0 | 0.0 | 1.0 |
| OKIBEPOP_10 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_11 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_12 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_13 | 1.0 | 0.0 | 1.0 |
| OKIBEPOP_14 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_15 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_16 | 1.0 | 0.0 | 1.0 |
| OKIBEPOP_17 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_18 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_19 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_20 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_21 | 1.0 | 0.0 | 1.0 |
| OKIBEPOP_22 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_23 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_24 | 1.0 | 0.0 | 1.0 |
| OKIBEPOP_26 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_27 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_28 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_30 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_31 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_32 | 1.0 | 0.0 | 1.0 |
| OKIBEPOP_33 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_34 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_35 | 0.0 | 1.0 | 0.0 |
| OKIBEPOP_37 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OKIBEPOP_12 | 351260 | 377694 | False | Siphoviridae | VOG0685, VOG0283, VOG0226, VOG0514, VOG4799, VOG6005, VOG0044, VOG3307, VOG3643, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605 |
| OKIBEPOP_15 | 2381 | 29613 | False | Siphoviridae | VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0045, VOG1183, VOG0198, VOG3643, VOG0044, VOG4693, VOG4552, VOG4566, VOG0535, VOG0650, VOG3549 |
| OKIBEPOP_15 | 73289 | 92726 | False | Siphoviridae | VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| OKIBEPOP_15 | 97764 | 104363 | False | Siphoviridae | VOG0327, VOG4609, VOG4632, VOG10557, VOG6545, VOG0322, VOG4548, VOG0321 |
| OKIBEPOP_22 | 34611 | 39049 | False | Siphoviridae | VOG6005, VOG10015, VOG9459, VOG0044, VOG0634, VOG1049, VOG0198, VOG4841 |
| OKIBEPOP_35 | 7843 | 24398 | False | Siphoviridae | VOG9295, VOG0796, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0698, VOG8134, VOG0701 |
Phigaro v2.4.0 (Database: Jan. 2024 release)