Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LMAJEJII_27 | 873688 | 874392 | WalR | 5.63e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LMAJEJII_27 | 91727 | 91533 | CspR | 4.49e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LMAJEJII_27 | 91727 | 91530 | CspA | 6.88e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LMAJEJII_10 | 23424 | 24521 | repUS73 | 1101 / 1101 | 93.91 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMAJEJII_1 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_2 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_3 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_4 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_5 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_6 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_7 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_9 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_10 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_11 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_12 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_13 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_14 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_15 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_16 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_17 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_18 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_20 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_21 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_22 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_23 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_24 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_25 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_26 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_27 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_29 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_30 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_31 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_32 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_33 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_34 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_35 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_36 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_38 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_39 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_41 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_42 | 1.0 | 0.0 | 1.0 |
| LMAJEJII_43 | 0.0 | 1.0 | 0.0 |
| LMAJEJII_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMAJEJII_4 | 55723 | 82989 | False | Siphoviridae | VOG0322, VOG0514, VOG4799, VOG0189, VOG6005, VOG10015, VOG1551, VOG5883, VOG0044, VOG0044, VOG3643, VOG0198, VOG1315, VOG4841, VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605 |
| LMAJEJII_17 | 3940 | 25642 | False | Siphoviridae | VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498 |
| LMAJEJII_27 | 385568 | 417343 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG4783, VOG7896, VOG4334, VOG4626, VOG1637, VOG3463, VOG4619, VOG0801, VOG4910, VOG4545, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG0198, VOG4693, VOG4566, VOG0186, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495, VOG11003 |
| LMAJEJII_27 | 446375 | 477303 | False | Siphoviridae | VOG8868, VOG7896, VOG4334, VOG4626, VOG4904, VOG7548, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG5660, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG1315, VOG0198, VOG9671, VOG0044, VOG6970, VOG1297, VOG3468, VOG3480, VOG0327, VOG0189, VOG5046, VOG0535, VOG2703 |
| LMAJEJII_27 | 864374 | 870722 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG1886, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)