Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
EGPODEHB_12364338365042WalR2.09e-114transcriptional regulatory protein84.25100.00EPH95667
EGPODEHB_238708686892CspR1.53e-29cold shock protein84.6198.48AAO82613
EGPODEHB_238708686889CspA2.35e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
EGPODEHB_191036111296rep28936 / 93699.89CP005948
EGPODEHB_2524013077repUS75679 / 105984.39CP002393
EGPODEHB_3522093165repUS64959 / 95484.25JN601038
EGPODEHB_112424624988rep33748 / 119482.09HE613570

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
EGPODEHB_10.01.00.0
EGPODEHB_20.01.00.0
EGPODEHB_30.01.00.0
EGPODEHB_40.01.00.0
EGPODEHB_50.01.00.0
EGPODEHB_60.01.00.0
EGPODEHB_70.01.00.0
EGPODEHB_80.01.00.0
EGPODEHB_90.01.00.0
EGPODEHB_100.01.00.0
EGPODEHB_111.00.01.0
EGPODEHB_120.01.00.0
EGPODEHB_130.01.00.0
EGPODEHB_141.00.01.0
EGPODEHB_151.00.01.0
EGPODEHB_160.01.00.0
EGPODEHB_170.01.00.0
EGPODEHB_180.01.00.0
EGPODEHB_191.00.01.0
EGPODEHB_200.01.00.0
EGPODEHB_211.00.01.0
EGPODEHB_221.00.01.0
EGPODEHB_230.01.00.0
EGPODEHB_241.00.01.0
EGPODEHB_251.00.01.0
EGPODEHB_261.00.01.0
EGPODEHB_271.00.01.0
EGPODEHB_281.00.01.0
EGPODEHB_291.00.01.0
EGPODEHB_301.00.01.0
EGPODEHB_311.00.01.0
EGPODEHB_321.00.01.0
EGPODEHB_330.01.00.0
EGPODEHB_341.00.01.0
EGPODEHB_351.00.01.0
EGPODEHB_361.00.01.0
EGPODEHB_381.00.01.0
EGPODEHB_401.00.01.0
EGPODEHB_411.00.01.0
EGPODEHB_421.00.01.0
EGPODEHB_440.01.00.0
EGPODEHB_550.01.00.0
EGPODEHB_660.01.00.0
EGPODEHB_690.01.00.0
EGPODEHB_700.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
EGPODEHB_11087934216FalseSiphoviridaeVOG4841, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG0083, VOG4605, VOG4599, VOG10957, VOG8870
EGPODEHB_53795247151FalseSiphoviridaeVOG4602, VOG8520, VOG1563, VOG8222, VOG0181, VOG2361, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327
EGPODEHB_55045871499FalseSiphoviridaeVOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917
EGPODEHB_44145238168809FalseSiphoviridaeVOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements