Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
BDBPKGKK_12364338365042WalR2.09e-114transcriptional regulatory protein84.25100.00EPH95667
BDBPKGKK_238708686892CspR1.53e-29cold shock protein84.6198.48AAO82613
BDBPKGKK_238708686889CspA2.35e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
BDBPKGKK_171036111296rep28936 / 93699.89CP005948
BDBPKGKK_2024013077repUS75679 / 105984.39CP002393
BDBPKGKK_3113662322repUS64959 / 95484.25JN601038

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
BDBPKGKK_10.01.00.0
BDBPKGKK_20.01.00.0
BDBPKGKK_30.01.00.0
BDBPKGKK_40.01.00.0
BDBPKGKK_50.01.00.0
BDBPKGKK_60.01.00.0
BDBPKGKK_70.01.00.0
BDBPKGKK_80.01.00.0
BDBPKGKK_90.01.00.0
BDBPKGKK_100.01.00.0
BDBPKGKK_111.00.01.0
BDBPKGKK_120.01.00.0
BDBPKGKK_131.00.01.0
BDBPKGKK_140.01.00.0
BDBPKGKK_150.01.00.0
BDBPKGKK_160.01.00.0
BDBPKGKK_171.00.01.0
BDBPKGKK_181.00.01.0
BDBPKGKK_191.00.01.0
BDBPKGKK_201.00.01.0
BDBPKGKK_211.00.01.0
BDBPKGKK_221.00.01.0
BDBPKGKK_230.01.00.0
BDBPKGKK_241.00.01.0
BDBPKGKK_251.00.01.0
BDBPKGKK_261.00.01.0
BDBPKGKK_271.00.01.0
BDBPKGKK_281.00.01.0
BDBPKGKK_291.00.01.0
BDBPKGKK_301.00.01.0
BDBPKGKK_311.00.01.0
BDBPKGKK_321.00.01.0
BDBPKGKK_330.01.00.0
BDBPKGKK_351.00.01.0
BDBPKGKK_361.00.01.0
BDBPKGKK_381.00.01.0
BDBPKGKK_391.00.01.0
BDBPKGKK_401.00.01.0
BDBPKGKK_440.01.00.0
BDBPKGKK_550.01.00.0
BDBPKGKK_600.01.00.0
BDBPKGKK_610.01.00.0
BDBPKGKK_620.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
BDBPKGKK_11087934216FalseSiphoviridaeVOG4841, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG0083, VOG4605, VOG4599, VOG10957, VOG8870
BDBPKGKK_53795271499FalseSiphoviridaeVOG4602, VOG8520, VOG1563, VOG8222, VOG0181, VOG2361, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG1183, VOG4673, VOG6972, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917
BDBPKGKK_445640979980FalseSiphoviridaeVOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements