Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GEAPODLE_12 | 109210 | 109914 | WalR | 1.51e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GEAPODLE_55 | 91563 | 91369 | CspR | 7.65e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GEAPODLE_55 | 91563 | 91366 | CspA | 1.17e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GEAPODLE_16 | 5336 | 6238 | rep38 | 903 / 903 | 99.34 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GEAPODLE_1 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_2 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_3 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_4 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_5 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_6 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_7 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_8 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_9 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_10 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_11 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_12 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_13 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_14 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_15 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_16 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_17 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_18 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_19 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_20 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_21 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_22 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_23 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_24 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_25 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_26 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_27 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_28 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_29 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_30 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_31 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_32 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_33 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_36 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_38 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_39 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_40 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_41 | 1.0 | 0.0 | 1.0 |
| GEAPODLE_44 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_54 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_55 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_56 | 0.0 | 1.0 | 0.0 |
| GEAPODLE_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GEAPODLE_1 | 363967 | 393009 | False | Siphoviridae | VOG0054, VOG0753, VOG4615, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG3643, VOG0044 |
| GEAPODLE_2 | 43711 | 50408 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568 |
Phigaro v2.4.0 (Database: Jan. 2024 release)