Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCHIIPNP_11 | 22621 | 23325 | WalR | 2.49e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HCHIIPNP_25 | 149146 | 149340 | CspR | 1.85e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HCHIIPNP_25 | 149146 | 149343 | CspA | 2.84e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HCHIIPNP_8 | 5770 | 6705 | rep28 | 936 / 936 | 100.00 | CP005948 |
| HCHIIPNP_10 | 876 | 1829 | repUS64 | 954 / 954 | 97.59 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCHIIPNP_1 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_2 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_3 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_4 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_5 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_6 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_7 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_8 | 1.0 | 0.0 | 1.0 |
| HCHIIPNP_10 | 1.0 | 0.0 | 1.0 |
| HCHIIPNP_11 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_12 | 1.0 | 0.0 | 1.0 |
| HCHIIPNP_19 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_25 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_26 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_27 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_28 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_29 | 0.0 | 1.0 | 0.0 |
| HCHIIPNP_30 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCHIIPNP_25 | 296234 | 326059 | False | Siphoviridae | VOG0685, VOG0283, VOG0226, VOG10904, VOG0514, VOG4566, VOG0189, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG6939, VOG4556, VOG4568, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
| HCHIIPNP_29 | 76713 | 104644 | False | Siphoviridae | VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4673, VOG3643, VOG0044, VOG0327, VOG4609, VOG4632, VOG6545 |
Phigaro v2.4.0 (Database: Jan. 2024 release)