Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LDOJCBOO_1 | 444445 | 443741 | WalR | 3.61e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| LDOJCBOO_12 | 429285 | 429479 | CspR | 2.10e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LDOJCBOO_12 | 429285 | 429482 | CspA | 3.22e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LDOJCBOO_14 | 9083 | 10183 | repUS73 | 1101 / 1101 | 94.01 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LDOJCBOO_1 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_2 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_3 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_4 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_5 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_6 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_7 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_8 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_9 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_10 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_11 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_12 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_13 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_14 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_15 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_16 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_17 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_18 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_19 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_20 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_21 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_22 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_23 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_24 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_25 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_27 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_28 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_29 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_31 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_32 | 1.0 | 0.0 | 1.0 |
| LDOJCBOO_33 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_44 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_54 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_57 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_58 | 0.0 | 1.0 | 0.0 |
| LDOJCBOO_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LDOJCBOO_1 | 443738 | 453902 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
| LDOJCBOO_7 | 943 | 19719 | False | Siphoviridae | VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG5660, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG5616, VOG3015 |
| LDOJCBOO_12 | 284614 | 322768 | False | Siphoviridae | VOG6495, VOG6495, VOG11003, VOG6495, VOG0181, VOG7298, VOG1309, VOG0186, VOG6495, VOG4566, VOG4693, VOG3480, VOG5878, VOG0198, VOG9295, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294 |
| LDOJCBOO_54 | 6283 | 18947 | False | Siphoviridae | VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG3307, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)