Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NEKGAFBM_22 | 230945 | 230241 | WalR | 1.98e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NEKGAFBM_12 | 327270 | 327464 | CspR | 1.84e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NEKGAFBM_12 | 327270 | 327467 | CspA | 2.81e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NEKGAFBM_1 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_2 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_3 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_4 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_5 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_6 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_7 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_8 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_9 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_10 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_11 | 1.0 | 0.0 | 1.0 |
| NEKGAFBM_12 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_13 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_14 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_15 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_16 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_17 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_18 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_19 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_21 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_22 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_24 | 1.0 | 0.0 | 1.0 |
| NEKGAFBM_25 | 1.0 | 0.0 | 1.0 |
| NEKGAFBM_33 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_44 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_46 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_47 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_48 | 0.0 | 1.0 | 0.0 |
| NEKGAFBM_49 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NEKGAFBM_9 | 28084 | 53821 | False | Siphoviridae | VOG8425, VOG7719, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254 |
| NEKGAFBM_12 | 2139 | 24980 | False | Siphoviridae | VOG0198, VOG0418, VOG0611, VOG0691, VOG0692, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG0801, VOG4619, VOG1637 |
| NEKGAFBM_22 | 232190 | 240609 | False | Siphoviridae | VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
| NEKGAFBM_49 | 3286 | 28441 | False | Siphoviridae | VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)