Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
IEOCCBKM_239230493008WalR1.40e-114transcriptional regulatory protein84.25100.00EPH95667
IEOCCBKM_33200449200255CspR1.09e-29cold shock protein84.6198.48AAO82613
IEOCCBKM_33200449200252CspA1.67e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
IEOCCBKM_2715312455repUS64930 / 95485.48JN601038
IEOCCBKM_1493419998rep38663 / 90384.31CP005943
IEOCCBKM_191301064rep28941 / 93083.21CP003162

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
IEOCCBKM_10.01.00.0
IEOCCBKM_20.01.00.0
IEOCCBKM_30.01.00.0
IEOCCBKM_40.01.00.0
IEOCCBKM_50.01.00.0
IEOCCBKM_60.01.00.0
IEOCCBKM_70.01.00.0
IEOCCBKM_80.01.00.0
IEOCCBKM_90.01.00.0
IEOCCBKM_100.01.00.0
IEOCCBKM_110.01.00.0
IEOCCBKM_120.01.00.0
IEOCCBKM_131.00.01.0
IEOCCBKM_141.00.01.0
IEOCCBKM_151.00.01.0
IEOCCBKM_161.00.01.0
IEOCCBKM_171.00.01.0
IEOCCBKM_181.00.01.0
IEOCCBKM_191.00.01.0
IEOCCBKM_201.00.01.0
IEOCCBKM_211.00.01.0
IEOCCBKM_221.00.01.0
IEOCCBKM_230.01.00.0
IEOCCBKM_241.00.01.0
IEOCCBKM_261.00.01.0
IEOCCBKM_271.00.01.0
IEOCCBKM_281.00.01.0
IEOCCBKM_290.01.00.0
IEOCCBKM_311.00.01.0
IEOCCBKM_321.00.01.0
IEOCCBKM_330.01.00.0
IEOCCBKM_341.00.01.0
IEOCCBKM_440.01.00.0
IEOCCBKM_530.01.00.0
IEOCCBKM_540.01.00.0
IEOCCBKM_550.01.00.0
IEOCCBKM_560.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
IEOCCBKM_5691388134337FalseSiphoviridaeVOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG4122, VOG7508, VOG4602, VOG9667, VOG11077, VOG0181, VOG7298, VOG0535, VOG0283, VOG0226, VOG4855, VOG4552, VOG4693, VOG0586, VOG0198, VOG5709, VOG1183, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements