Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CHJOJPHG_46 | 48595 | 49299 | WalR | 3.16e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CHJOJPHG_68 | 13550 | 13356 | CspR | 2.14e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CHJOJPHG_68 | 13550 | 13353 | CspA | 3.28e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CHJOJPHG_171 | 81 | 1181 | repUS73 | 1101 / 1101 | 94.19 | CP002654 |
| CHJOJPHG_15 | 11 | 804 | repUS64 | 798 / 954 | 84.96 | JN601038 |
| CHJOJPHG_6 | 394 | 1052 | rep28 | 660 / 936 | 82.58 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHJOJPHG_1 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_2 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_3 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_4 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_5 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_6 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_7 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_8 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_9 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_10 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_11 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_12 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_13 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_14 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_15 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_16 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_17 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_18 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_20 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_21 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_22 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_23 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_24 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_25 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_26 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_27 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_28 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_29 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_30 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_31 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_32 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_33 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_34 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_35 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_36 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_38 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_39 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_40 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_41 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_42 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_43 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_44 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_45 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_46 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_47 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_48 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_49 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_50 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_51 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_52 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_53 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_54 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_55 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_57 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_68 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_79 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_90 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_99 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_104 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_105 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_106 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_107 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_108 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_109 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_110 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_111 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_112 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_113 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_114 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_115 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_116 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_117 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_118 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_119 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_120 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_121 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_122 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_123 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_124 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_125 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_126 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_127 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_128 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_129 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_130 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_131 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_132 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_133 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_134 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_135 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_136 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_137 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_138 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_139 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_140 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_141 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_142 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_143 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_144 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_145 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_146 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_147 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_148 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_149 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_150 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_151 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_152 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_153 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_154 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_155 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_156 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_157 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_158 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_159 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_160 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_161 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_162 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_163 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_164 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_165 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_166 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_167 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_168 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_169 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_170 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_171 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_172 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_173 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_174 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_175 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_176 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_177 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_178 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_179 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_180 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_181 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_182 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_183 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_184 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_185 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_186 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_187 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_188 | 1.0 | 0.0 | 1.0 |
| CHJOJPHG_189 | 0.0 | 1.0 | 0.0 |
| CHJOJPHG_190 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHJOJPHG_13 | 3503 | 33378 | False | Siphoviridae | VOG0322, VOG6545, VOG0514, VOG4636, VOG0189, VOG11024, VOG4693, VOG6299, VOG0044, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870, VOG1050, VOG9998 |
| CHJOJPHG_24 | 5946 | 50169 | False | Siphoviridae | VOG0205, VOG4581, VOG4544, VOG2935, VOG4556, VOG4553, VOG0204, VOG0198, VOG0275, VOG1347, VOG7508, VOG4602, VOG6495, VOG3556, VOG0181, VOG7298, VOG1309, VOG0186, VOG4566, VOG4552, VOG4693, VOG0044, VOG3643, VOG2602, VOG0198, VOG0045, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG4545, VOG4633, VOG4828, VOG4619, VOG4856 |
Phigaro v2.4.0 (Database: Jan. 2024 release)