Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
CJCBJCDK_134613046834WalR4.27e-115transcriptional regulatory protein84.25100.00EPH95667
CJCBJCDK_315223952433CspR2.92e-30cold shock protein84.6198.48AAO82613
CJCBJCDK_315223952436CspA4.49e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
CJCBJCDK_8369767905rep28930 / 93098.71CP003162
CJCBJCDK_9419403040repUS731101 / 110195.55CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
CJCBJCDK_10.01.00.0
CJCBJCDK_20.01.00.0
CJCBJCDK_130.01.00.0
CJCBJCDK_240.01.00.0
CJCBJCDK_310.01.00.0
CJCBJCDK_320.01.00.0
CJCBJCDK_330.01.00.0
CJCBJCDK_340.01.00.0
CJCBJCDK_350.01.00.0
CJCBJCDK_360.01.00.0
CJCBJCDK_370.01.00.0
CJCBJCDK_380.01.00.0
CJCBJCDK_390.01.00.0
CJCBJCDK_400.01.00.0
CJCBJCDK_410.01.00.0
CJCBJCDK_420.01.00.0
CJCBJCDK_430.01.00.0
CJCBJCDK_440.01.00.0
CJCBJCDK_450.01.00.0
CJCBJCDK_460.01.00.0
CJCBJCDK_470.01.00.0
CJCBJCDK_480.01.00.0
CJCBJCDK_490.01.00.0
CJCBJCDK_500.01.00.0
CJCBJCDK_510.01.00.0
CJCBJCDK_520.01.00.0
CJCBJCDK_531.00.01.0
CJCBJCDK_540.01.00.0
CJCBJCDK_550.01.00.0
CJCBJCDK_560.01.00.0
CJCBJCDK_570.01.00.0
CJCBJCDK_580.01.00.0
CJCBJCDK_590.01.00.0
CJCBJCDK_600.01.00.0
CJCBJCDK_610.01.00.0
CJCBJCDK_620.01.00.0
CJCBJCDK_631.00.01.0
CJCBJCDK_640.01.00.0
CJCBJCDK_650.01.00.0
CJCBJCDK_660.01.00.0
CJCBJCDK_670.01.00.0
CJCBJCDK_680.01.00.0
CJCBJCDK_690.01.00.0
CJCBJCDK_700.01.00.0
CJCBJCDK_710.01.00.0
CJCBJCDK_720.01.00.0
CJCBJCDK_731.00.01.0
CJCBJCDK_740.01.00.0
CJCBJCDK_750.01.00.0
CJCBJCDK_760.01.00.0
CJCBJCDK_770.01.00.0
CJCBJCDK_780.01.00.0
CJCBJCDK_790.01.00.0
CJCBJCDK_801.00.01.0
CJCBJCDK_810.01.00.0
CJCBJCDK_820.01.00.0
CJCBJCDK_831.00.01.0
CJCBJCDK_840.01.00.0
CJCBJCDK_850.01.00.0
CJCBJCDK_860.01.00.0
CJCBJCDK_870.01.00.0
CJCBJCDK_880.01.00.0
CJCBJCDK_890.01.00.0
CJCBJCDK_901.00.01.0
CJCBJCDK_911.00.01.0
CJCBJCDK_920.01.00.0
CJCBJCDK_930.01.00.0
CJCBJCDK_941.00.01.0
CJCBJCDK_950.01.00.0
CJCBJCDK_960.01.00.0
CJCBJCDK_971.00.01.0
CJCBJCDK_981.00.01.0
CJCBJCDK_1001.00.01.0
CJCBJCDK_1010.01.00.0
CJCBJCDK_1030.01.00.0
CJCBJCDK_1041.00.01.0
CJCBJCDK_1061.00.01.0
CJCBJCDK_1071.00.01.0
CJCBJCDK_1080.01.00.0
CJCBJCDK_1091.00.01.0
CJCBJCDK_1101.00.01.0
CJCBJCDK_1111.00.01.0
CJCBJCDK_1121.00.01.0
CJCBJCDK_1131.00.01.0
CJCBJCDK_1140.01.00.0
CJCBJCDK_1161.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
CJCBJCDK_44514432925FalseSiphoviridaeVOG4619, VOG0801, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG0198, VOG1049, VOG0044, VOG10015, VOG1297, VOG0327, VOG4566, VOG0186, VOG1309, VOG2703, VOG0181, VOG2786
CJCBJCDK_53118815089FalseSiphoviridaeVOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG6540
CJCBJCDK_63265820570FalseSiphoviridaeVOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG0083, VOG4605
CJCBJCDK_1036339184785FalseSiphoviridaeVOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4568, VOG4556, VOG6939, VOG1886, VOG4581

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements