Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DENICDJP_8 | 46130 | 46834 | WalR | 4.28e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| DENICDJP_1 | 171995 | 171801 | CspR | 9.91e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| DENICDJP_1 | 171995 | 171798 | CspA | 1.52e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DENICDJP_40 | 7032 | 7961 | rep28 | 930 / 930 | 98.71 | CP003162 |
| DENICDJP_39 | 1940 | 3040 | repUS73 | 1101 / 1101 | 95.55 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DENICDJP_1 | 0.0 | 1.0 | 0.0 |
| DENICDJP_2 | 0.0 | 1.0 | 0.0 |
| DENICDJP_3 | 0.0 | 1.0 | 0.0 |
| DENICDJP_4 | 0.0 | 1.0 | 0.0 |
| DENICDJP_5 | 0.0 | 1.0 | 0.0 |
| DENICDJP_6 | 0.0 | 1.0 | 0.0 |
| DENICDJP_7 | 0.0 | 1.0 | 0.0 |
| DENICDJP_8 | 0.0 | 1.0 | 0.0 |
| DENICDJP_9 | 0.0 | 1.0 | 0.0 |
| DENICDJP_10 | 0.0 | 1.0 | 0.0 |
| DENICDJP_11 | 0.0 | 1.0 | 0.0 |
| DENICDJP_12 | 0.0 | 1.0 | 0.0 |
| DENICDJP_13 | 0.0 | 1.0 | 0.0 |
| DENICDJP_14 | 0.0 | 1.0 | 0.0 |
| DENICDJP_15 | 0.0 | 1.0 | 0.0 |
| DENICDJP_16 | 0.0 | 1.0 | 0.0 |
| DENICDJP_17 | 0.0 | 1.0 | 0.0 |
| DENICDJP_18 | 0.0 | 1.0 | 0.0 |
| DENICDJP_19 | 0.0 | 1.0 | 0.0 |
| DENICDJP_20 | 0.0 | 1.0 | 0.0 |
| DENICDJP_21 | 0.0 | 1.0 | 0.0 |
| DENICDJP_22 | 0.0 | 1.0 | 0.0 |
| DENICDJP_23 | 0.0 | 1.0 | 0.0 |
| DENICDJP_24 | 0.0 | 1.0 | 0.0 |
| DENICDJP_25 | 1.0 | 0.0 | 1.0 |
| DENICDJP_26 | 0.0 | 1.0 | 0.0 |
| DENICDJP_27 | 0.0 | 1.0 | 0.0 |
| DENICDJP_28 | 0.0 | 1.0 | 0.0 |
| DENICDJP_29 | 0.0 | 1.0 | 0.0 |
| DENICDJP_30 | 0.0 | 1.0 | 0.0 |
| DENICDJP_31 | 0.0 | 1.0 | 0.0 |
| DENICDJP_32 | 0.0 | 1.0 | 0.0 |
| DENICDJP_33 | 0.0 | 1.0 | 0.0 |
| DENICDJP_34 | 0.0 | 1.0 | 0.0 |
| DENICDJP_35 | 0.0 | 1.0 | 0.0 |
| DENICDJP_36 | 1.0 | 0.0 | 1.0 |
| DENICDJP_37 | 0.0 | 1.0 | 0.0 |
| DENICDJP_38 | 1.0 | 0.0 | 1.0 |
| DENICDJP_39 | 1.0 | 0.0 | 1.0 |
| DENICDJP_40 | 1.0 | 0.0 | 1.0 |
| DENICDJP_41 | 0.0 | 1.0 | 0.0 |
| DENICDJP_42 | 0.0 | 1.0 | 0.0 |
| DENICDJP_43 | 1.0 | 0.0 | 1.0 |
| DENICDJP_44 | 0.0 | 1.0 | 0.0 |
| DENICDJP_45 | 0.0 | 1.0 | 0.0 |
| DENICDJP_46 | 1.0 | 0.0 | 1.0 |
| DENICDJP_47 | 1.0 | 0.0 | 1.0 |
| DENICDJP_48 | 0.0 | 1.0 | 0.0 |
| DENICDJP_49 | 0.0 | 1.0 | 0.0 |
| DENICDJP_50 | 0.0 | 1.0 | 0.0 |
| DENICDJP_51 | 1.0 | 0.0 | 1.0 |
| DENICDJP_52 | 1.0 | 0.0 | 1.0 |
| DENICDJP_54 | 1.0 | 0.0 | 1.0 |
| DENICDJP_55 | 0.0 | 1.0 | 0.0 |
| DENICDJP_56 | 1.0 | 0.0 | 1.0 |
| DENICDJP_57 | 1.0 | 0.0 | 1.0 |
| DENICDJP_58 | 1.0 | 0.0 | 1.0 |
| DENICDJP_60 | 1.0 | 0.0 | 1.0 |
| DENICDJP_61 | 1.0 | 0.0 | 1.0 |
| DENICDJP_62 | 1.0 | 0.0 | 1.0 |
| DENICDJP_63 | 1.0 | 0.0 | 1.0 |
| DENICDJP_64 | 1.0 | 0.0 | 1.0 |
| DENICDJP_65 | 1.0 | 0.0 | 1.0 |
| DENICDJP_66 | 0.0 | 1.0 | 0.0 |
| DENICDJP_67 | 1.0 | 0.0 | 1.0 |
| DENICDJP_77 | 0.0 | 1.0 | 0.0 |
| DENICDJP_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DENICDJP_5 | 3774 | 24677 | False | Siphoviridae | VOG4599, VOG4605, VOG0083, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198 |
| DENICDJP_25 | 6539 | 25304 | False | Siphoviridae | VOG6540, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568 |
| DENICDJP_34 | 63391 | 87734 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4568, VOG4556, VOG6939, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG0044 |
| DENICDJP_77 | 5144 | 32925 | False | Siphoviridae | VOG4619, VOG0801, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG0198, VOG1049, VOG0044, VOG10015, VOG1297, VOG0327, VOG4566, VOG0186, VOG1309, VOG2703, VOG0181, VOG2786 |
Phigaro v2.4.0 (Database: Jan. 2024 release)