Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BMHIFOOA_23 | 92056 | 92760 | WalR | 1.30e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| BMHIFOOA_1 | 135473 | 135667 | CspR | 1.71e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BMHIFOOA_1 | 135473 | 135670 | CspA | 2.62e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BMHIFOOA_29 | 6593 | 7495 | rep38 | 903 / 903 | 99.45 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BMHIFOOA_1 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_2 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_3 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_4 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_5 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_6 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_7 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_8 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_9 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_10 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_11 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_12 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_13 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_14 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_15 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_16 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_17 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_18 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_19 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_20 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_21 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_22 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_23 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_24 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_25 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_26 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_27 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_28 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_29 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_30 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_31 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_32 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_33 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_34 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_35 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_36 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_37 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_38 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_39 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_40 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_41 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_42 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_43 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_44 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_45 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_46 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_47 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_48 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_49 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_50 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_51 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_52 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_53 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_54 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_55 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_57 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_58 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_59 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_60 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_62 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_63 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_64 | 1.0 | 0.0 | 1.0 |
| BMHIFOOA_66 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_77 | 0.0 | 1.0 | 0.0 |
| BMHIFOOA_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BMHIFOOA_12 | 237273 | 250785 | False | Siphoviridae | VOG6540, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163 |
| BMHIFOOA_13 | 30312 | 38005 | False | Siphoviridae | VOG8222, VOG8925, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327 |
| BMHIFOOA_34 | 192279 | 212263 | False | Siphoviridae | VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556 |
| BMHIFOOA_44 | 95108 | 146657 | False | Siphoviridae | VOG4783, VOG7896, VOG4334, VOG4626, VOG4619, VOG0801, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG0198, VOG1049, VOG3643, VOG0044, VOG3480, VOG0586, VOG4693, VOG4855, VOG6545, VOG0322, VOG0535, VOG9667, VOG0181, VOG3556, VOG6495, VOG4602, VOG1648, VOG0985, VOG9754, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
| BMHIFOOA_44 | 167482 | 191600 | False | Siphoviridae | VOG8917, VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG9583, VOG1320, VOG4713, VOG0694, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG0198, VOG2602, VOG3643, VOG4567 |
Phigaro v2.4.0 (Database: Jan. 2024 release)