Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EJEFPEDE_12 | 119470 | 118766 | WalR | 1.20e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| EJEFPEDE_34 | 98449 | 98643 | CspR | 8.25e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EJEFPEDE_34 | 98449 | 98646 | CspA | 1.27e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EJEFPEDE_32 | 757 | 1692 | rep28 | 936 / 936 | 100.00 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EJEFPEDE_1 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_2 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_3 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_4 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_5 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_6 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_7 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_8 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_9 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_10 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_11 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_12 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_13 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_14 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_15 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_16 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_17 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_18 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_19 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_20 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_21 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_22 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_23 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_24 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_25 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_26 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_27 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_28 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_29 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_30 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_31 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_32 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_33 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_34 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_35 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_36 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_37 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_39 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_40 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_41 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_42 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_44 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_45 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_46 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_47 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_48 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_49 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_50 | 1.0 | 0.0 | 1.0 |
| EJEFPEDE_55 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_66 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_77 | 0.0 | 1.0 | 0.0 |
| EJEFPEDE_78 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EJEFPEDE_9 | 77214 | 85948 | False | Siphoviridae | VOG4841, VOG7718, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205 |
| EJEFPEDE_12 | 120124 | 132321 | False | Siphoviridae | VOG3477, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| EJEFPEDE_17 | 13709 | 15500 | False | Unknown | VOG2154, VOG5944, VOG2154 |
| EJEFPEDE_55 | 85422 | 108533 | False | Siphoviridae | VOG0198, VOG0686, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG3463, VOG1637, VOG4660, VOG4705, VOG8294, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)