Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMCFFGHA_78 | 109415 | 110119 | WalR | 1.03e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| PMCFFGHA_43 | 7127 | 7321 | CspR | 9.12e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PMCFFGHA_43 | 7127 | 7324 | CspA | 1.40e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMCFFGHA_1 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_2 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_13 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_16 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_17 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_18 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_19 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_20 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_21 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_22 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_23 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_24 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_25 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_26 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_27 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_28 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_29 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_30 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_31 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_32 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_33 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_34 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_35 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_36 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_37 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_38 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_39 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_40 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_41 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_42 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_43 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_44 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_45 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_46 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_47 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_48 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_49 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_50 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_51 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_52 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_53 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_54 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_55 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_56 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_57 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_58 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_59 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_62 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_63 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_64 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_65 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_66 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_67 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_69 | 1.0 | 0.0 | 1.0 |
| PMCFFGHA_71 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_72 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_78 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_89 | 0.0 | 1.0 | 0.0 |
| PMCFFGHA_100 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMCFFGHA_22 | 3460 | 32007 | False | Siphoviridae | VOG0198, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637, VOG0054 |
| PMCFFGHA_38 | 3500 | 17226 | False | Siphoviridae | VOG1049, VOG0198, VOG0796, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG8134 |
| PMCFFGHA_39 | 2571 | 20090 | False | Siphoviridae | VOG5616, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG6163 |
Phigaro v2.4.0 (Database: Jan. 2024 release)