Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EKENBNIB_39 | 74660 | 73956 | WalR | 8.17e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| EKENBNIB_22 | 231012 | 231206 | CspR | 1.41e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EKENBNIB_22 | 231012 | 231209 | CspA | 2.16e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EKENBNIB_19 | 920 | 1873 | repUS64 | 954 / 954 | 97.90 | JN601038 |
| EKENBNIB_13 | 26159 | 27188 | rep38 | 1040 / 1104 | 82.02 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EKENBNIB_1 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_2 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_3 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_4 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_5 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_6 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_7 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_8 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_9 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_10 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_11 | 1.0 | 0.0 | 1.0 |
| EKENBNIB_12 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_13 | 1.0 | 0.0 | 1.0 |
| EKENBNIB_14 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_15 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_16 | 1.0 | 0.0 | 1.0 |
| EKENBNIB_17 | 1.0 | 0.0 | 1.0 |
| EKENBNIB_18 | 1.0 | 0.0 | 1.0 |
| EKENBNIB_19 | 1.0 | 0.0 | 1.0 |
| EKENBNIB_20 | 1.0 | 0.0 | 1.0 |
| EKENBNIB_21 | 1.0 | 0.0 | 1.0 |
| EKENBNIB_22 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_23 | 1.0 | 0.0 | 1.0 |
| EKENBNIB_32 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_35 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_36 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_37 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_38 | 0.0 | 1.0 | 0.0 |
| EKENBNIB_39 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EKENBNIB_36 | 21091 | 31309 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
| EKENBNIB_38 | 74441 | 99509 | False | Siphoviridae | VOG0044, VOG3643, VOG1049, VOG0198, VOG3381, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG1637, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)