Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NAPGNMIF_1 | 123752 | 124456 | WalR | 2.50e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NAPGNMIF_23 | 217993 | 218187 | CspR | 1.35e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NAPGNMIF_23 | 217993 | 218190 | CspA | 2.08e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NAPGNMIF_28 | 2839 | 3878 | rep38 | 1042 / 1104 | 90.12 | CP002655 |
| NAPGNMIF_35 | 1 | 709 | repUS64 | 716 / 954 | 82.96 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NAPGNMIF_1 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_2 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_3 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_4 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_5 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_6 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_7 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_8 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_9 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_10 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_11 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_12 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_13 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_14 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_15 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_16 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_17 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_18 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_19 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_20 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_21 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_22 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_23 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_24 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_25 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_26 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_27 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_28 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_29 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_31 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_32 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_33 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_34 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_35 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_36 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_37 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_39 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_40 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_41 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_42 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_43 | 1.0 | 0.0 | 1.0 |
| NAPGNMIF_44 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_55 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_63 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_64 | 0.0 | 1.0 | 0.0 |
| NAPGNMIF_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NAPGNMIF_3 | 11834 | 44040 | False | Siphoviridae | VOG6005, VOG0044, VOG9671, VOG0198, VOG4841, VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG0753, VOG0054, VOG1521, VOG1191 |
| NAPGNMIF_63 | 36903 | 38852 | False | Unknown | VOG6139, VOG8615, VOG3549 |
| NAPGNMIF_63 | 45695 | 68179 | False | Siphoviridae | VOG5616, VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG0801, VOG4619, VOG4856, VOG0804 |
Phigaro v2.4.0 (Database: Jan. 2024 release)