Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IDCNPNAP_2 | 76457 | 77161 | WalR | 4.76e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| IDCNPNAP_35 | 48048 | 48242 | CspR | 3.32e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| IDCNPNAP_35 | 48048 | 48245 | CspA | 5.09e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IDCNPNAP_120 | 2020 | 3120 | repUS73 | 1101 / 1101 | 95.64 | CP002654 |
| IDCNPNAP_97 | 9988 | 11027 | rep38 | 1042 / 1104 | 88.58 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IDCNPNAP_1 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_2 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_3 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_4 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_5 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_6 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_7 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_8 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_9 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_10 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_11 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_13 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_15 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_16 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_24 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_35 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_46 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_56 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_64 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_65 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_66 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_67 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_68 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_69 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_70 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_71 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_72 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_73 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_74 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_75 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_76 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_77 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_78 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_79 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_80 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_81 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_82 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_83 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_84 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_85 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_86 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_87 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_88 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_89 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_90 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_91 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_92 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_93 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_94 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_95 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_96 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_97 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_98 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_99 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_100 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_101 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_102 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_103 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_104 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_105 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_106 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_107 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_108 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_109 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_110 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_111 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_112 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_113 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_114 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_115 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_116 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_117 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_118 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_119 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_120 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_121 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_122 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_123 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_124 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_125 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_126 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_127 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_128 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_129 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_130 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_131 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_132 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_133 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_134 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_135 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_137 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_138 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_139 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_140 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_141 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_142 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_143 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_144 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_145 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_146 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_147 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_148 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_150 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_151 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_152 | 1.0 | 0.0 | 1.0 |
| IDCNPNAP_153 | 0.0 | 1.0 | 0.0 |
| IDCNPNAP_154 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IDCNPNAP_101 | 74803 | 103681 | False | Siphoviridae | VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG9998 |
| IDCNPNAP_112 | 60946 | 85688 | False | Siphoviridae | VOG0054, VOG0753, VOG8294, VOG7896, VOG3390, VOG4660, VOG4904, VOG7548, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG1320, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG5616, VOG5709, VOG0198 |
| IDCNPNAP_112 | 96043 | 111080 | False | Siphoviridae | VOG0275, VOG0198, VOG0204, VOG4553, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)