Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
FHBHMFHP_267180072504WalR5.50e-115transcriptional regulatory protein84.25100.00EPH95667
FHBHMFHP_528102081214CspR3.66e-30cold shock protein84.6198.48AAO82613
FHBHMFHP_528102081217CspA5.61e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
FHBHMFHP_18931966rep28936 / 936100.00CP005948
FHBHMFHP_15847845685rep38903 / 90399.45CP005943
FHBHMFHP_1302708928149repUS731061 / 110197.17CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
FHBHMFHP_10.01.00.0
FHBHMFHP_20.01.00.0
FHBHMFHP_31.00.01.0
FHBHMFHP_41.00.01.0
FHBHMFHP_51.00.01.0
FHBHMFHP_61.00.01.0
FHBHMFHP_71.00.01.0
FHBHMFHP_90.01.00.0
FHBHMFHP_170.01.00.0
FHBHMFHP_260.01.00.0
FHBHMFHP_360.01.00.0
FHBHMFHP_440.01.00.0
FHBHMFHP_520.01.00.0
FHBHMFHP_600.01.00.0
FHBHMFHP_660.01.00.0
FHBHMFHP_740.01.00.0
FHBHMFHP_810.01.00.0
FHBHMFHP_820.01.00.0
FHBHMFHP_900.01.00.0
FHBHMFHP_960.01.00.0
FHBHMFHP_1020.01.00.0
FHBHMFHP_1091.00.01.0
FHBHMFHP_1170.01.00.0
FHBHMFHP_1220.01.00.0
FHBHMFHP_1240.01.00.0
FHBHMFHP_1301.00.01.0
FHBHMFHP_1400.01.00.0
FHBHMFHP_1440.01.00.0
FHBHMFHP_1450.01.00.0
FHBHMFHP_1500.01.00.0
FHBHMFHP_1581.00.01.0
FHBHMFHP_1661.00.01.0
FHBHMFHP_1740.01.00.0
FHBHMFHP_1750.01.00.0
FHBHMFHP_1760.01.00.0
FHBHMFHP_1771.00.01.0
FHBHMFHP_1781.00.01.0
FHBHMFHP_1791.00.01.0
FHBHMFHP_1800.01.00.0
FHBHMFHP_1810.01.00.0
FHBHMFHP_1821.00.01.0
FHBHMFHP_1831.00.01.0
FHBHMFHP_1841.00.01.0
FHBHMFHP_1851.00.01.0
FHBHMFHP_1861.00.01.0
FHBHMFHP_1871.00.01.0
FHBHMFHP_1880.01.00.0
FHBHMFHP_1891.00.01.0
FHBHMFHP_1900.01.00.0
FHBHMFHP_1910.01.00.0
FHBHMFHP_1920.01.00.0
FHBHMFHP_1931.00.01.0
FHBHMFHP_1940.01.00.0
FHBHMFHP_1951.00.01.0
FHBHMFHP_1960.01.00.0
FHBHMFHP_1971.00.01.0
FHBHMFHP_1981.00.01.0
FHBHMFHP_1991.00.01.0
FHBHMFHP_2001.00.01.0
FHBHMFHP_2011.00.01.0
FHBHMFHP_2020.01.00.0
FHBHMFHP_2031.00.01.0
FHBHMFHP_2041.00.01.0
FHBHMFHP_2051.00.01.0
FHBHMFHP_2061.00.01.0
FHBHMFHP_2071.00.01.0
FHBHMFHP_2081.00.01.0
FHBHMFHP_2090.01.00.0
FHBHMFHP_2101.00.01.0
FHBHMFHP_2111.00.01.0
FHBHMFHP_2120.01.00.0
FHBHMFHP_2131.00.01.0
FHBHMFHP_2141.00.01.0
FHBHMFHP_2151.00.01.0
FHBHMFHP_2171.00.01.0
FHBHMFHP_2180.01.00.0
FHBHMFHP_2191.00.01.0
FHBHMFHP_2201.00.01.0
FHBHMFHP_2210.01.00.0
FHBHMFHP_2220.01.00.0
FHBHMFHP_2231.00.01.0
FHBHMFHP_2241.00.01.0
FHBHMFHP_2251.00.01.0
FHBHMFHP_2261.00.01.0
FHBHMFHP_2271.00.01.0
FHBHMFHP_2281.00.01.0
FHBHMFHP_2291.00.01.0
FHBHMFHP_2301.00.01.0
FHBHMFHP_2310.01.00.0
FHBHMFHP_2320.01.00.0
FHBHMFHP_2331.00.01.0
FHBHMFHP_2351.00.01.0
FHBHMFHP_2361.00.01.0
FHBHMFHP_2371.00.01.0
FHBHMFHP_2381.00.01.0
FHBHMFHP_2391.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
FHBHMFHP_366321292496FalseSiphoviridaeVOG9667, VOG2485, VOG0054, VOG0753, VOG8294, VOG4705, VOG8438, VOG4626, VOG7548, VOG3462, VOG0801, VOG6163, VOG3636, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0638, VOG5616, VOG0198, VOG3643, VOG0044, VOG0044, VOG4567, VOG0586
FHBHMFHP_180399133505FalseSiphoviridaeVOG0195, VOG3643, VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG8294, VOG5615, VOG0054
FHBHMFHP_191143018153475FalseSiphoviridaeVOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements