Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PHIMOBNA_12 | 192124 | 192828 | WalR | 3.43e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PHIMOBNA_43 | 130037 | 130231 | CspR | 7.78e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PHIMOBNA_43 | 130037 | 130234 | CspA | 1.19e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PHIMOBNA_10 | 7029 | 7904 | rep38 | 876 / 903 | 99.32 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PHIMOBNA_1 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_2 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_3 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_4 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_5 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_6 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_7 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_8 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_9 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_10 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_11 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_12 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_13 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_15 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_16 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_17 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_18 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_19 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_21 | 1.0 | 0.0 | 1.0 |
| PHIMOBNA_22 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_33 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_41 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_42 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_43 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_44 | 0.0 | 1.0 | 0.0 |
| PHIMOBNA_45 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PHIMOBNA_1 | 35945 | 66558 | False | Siphoviridae | VOG0685, VOG0283, VOG0226, VOG0514, VOG4799, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998 |
| PHIMOBNA_12 | 179513 | 191204 | False | Siphoviridae | VOG2687, VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
| PHIMOBNA_22 | 288482 | 321098 | False | Siphoviridae | VOG0535, VOG0283, VOG0226, VOG4855, VOG4693, VOG0586, VOG5047, VOG0198, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
| PHIMOBNA_41 | 198454 | 226434 | False | Siphoviridae | VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4673, VOG3643, VOG0044, VOG0327, VOG4609, VOG4632, VOG6545 |
Phigaro v2.4.0 (Database: Jan. 2024 release)