Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JAPLLGNO_38 | 42404 | 43108 | WalR | 1.02e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JAPLLGNO_32 | 86142 | 85948 | CspR | 4.11e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JAPLLGNO_32 | 86142 | 85945 | CspA | 6.31e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JAPLLGNO_15 | 63813 | 64910 | repUS73 | 1101 / 1101 | 93.91 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JAPLLGNO_1 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_2 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_3 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_4 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_5 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_6 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_7 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_8 | 1.0 | 0.0 | 1.0 |
| JAPLLGNO_9 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_10 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_11 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_12 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_13 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_14 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_15 | 1.0 | 0.0 | 1.0 |
| JAPLLGNO_16 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_17 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_20 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_22 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_23 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_24 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_25 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_26 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_27 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_28 | 1.0 | 0.0 | 1.0 |
| JAPLLGNO_29 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_31 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_32 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_33 | 1.0 | 0.0 | 1.0 |
| JAPLLGNO_34 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_35 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_36 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_38 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_39 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_40 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_41 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_42 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_43 | 0.0 | 1.0 | 0.0 |
| JAPLLGNO_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JAPLLGNO_1 | 14155 | 41707 | False | Siphoviridae | VOG4599, VOG4605, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904, VOG4841, VOG1315, VOG0198, VOG3643, VOG0044, VOG0044, VOG5883, VOG1551, VOG10015, VOG6005, VOG0189, VOG4799, VOG0514 |
| JAPLLGNO_5 | 73195 | 95193 | False | Siphoviridae | VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564 |
| JAPLLGNO_26 | 287238 | 316128 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG4783, VOG7896, VOG4334, VOG4626, VOG1637, VOG3463, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG0198, VOG4693, VOG4566, VOG0186 |
| JAPLLGNO_29 | 31910 | 63078 | False | Siphoviridae | VOG8868, VOG7896, VOG4334, VOG4626, VOG4904, VOG7548, VOG3462, VOG0801, VOG6163, VOG2021, VOG0725, VOG0799, VOG0724, VOG5660, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG1315, VOG0198, VOG9671, VOG0044, VOG6970, VOG1297, VOG3468, VOG3480, VOG0327, VOG0189, VOG5046, VOG0535, VOG2703, VOG3549 |
| JAPLLGNO_38 | 32917 | 39650 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4553 |
Phigaro v2.4.0 (Database: Jan. 2024 release)