Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EHPHDPLM_66 | 95613 | 96317 | WalR | 5.86e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| EHPHDPLM_21 | 34977 | 35171 | CspR | 1.56e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EHPHDPLM_21 | 34977 | 35174 | CspA | 2.39e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EHPHDPLM_48 | 7064 | 7999 | rep28 | 936 / 936 | 100.00 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EHPHDPLM_1 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_2 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_3 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_4 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_5 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_6 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_7 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_8 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_9 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_10 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_11 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_12 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_13 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_14 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_15 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_16 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_17 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_18 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_19 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_20 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_21 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_22 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_23 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_24 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_25 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_26 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_27 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_28 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_29 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_30 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_31 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_32 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_33 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_34 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_35 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_36 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_37 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_38 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_39 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_40 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_41 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_42 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_43 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_44 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_45 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_46 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_47 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_48 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_49 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_50 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_51 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_52 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_53 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_54 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_55 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_56 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_57 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_58 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_60 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_62 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_64 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_65 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_66 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_68 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_69 | 1.0 | 0.0 | 1.0 |
| EHPHDPLM_77 | 0.0 | 1.0 | 0.0 |
| EHPHDPLM_87 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EHPHDPLM_23 | 115003 | 139711 | False | Siphoviridae | VOG0054, VOG4373, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581 |
| EHPHDPLM_45 | 28271 | 39937 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
| EHPHDPLM_45 | 56124 | 84725 | False | Siphoviridae | VOG0044, VOG0198, VOG5709, VOG5616, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG3463, VOG9657, VOG8438, VOG4334, VOG4705, VOG8868, VOG8294, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)