Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JOOOHFCD_62 | 95613 | 96317 | WalR | 5.86e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JOOOHFCD_28 | 34977 | 35171 | CspR | 1.56e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JOOOHFCD_28 | 34977 | 35174 | CspA | 2.39e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JOOOHFCD_57 | 7130 | 8065 | rep28 | 936 / 936 | 100.00 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JOOOHFCD_1 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_2 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_9 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_10 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_11 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_12 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_13 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_14 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_15 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_16 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_17 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_18 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_19 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_20 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_21 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_22 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_23 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_24 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_25 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_26 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_27 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_28 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_29 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_30 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_31 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_32 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_33 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_34 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_35 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_36 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_37 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_38 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_39 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_40 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_41 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_42 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_43 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_44 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_45 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_46 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_47 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_48 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_49 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_50 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_51 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_52 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_53 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_54 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_55 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_56 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_57 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_58 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_59 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_60 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_61 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_62 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_63 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_64 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_65 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_66 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_67 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_68 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_69 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_70 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_72 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_73 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_76 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_77 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_78 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_79 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_80 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_82 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_83 | 0.0 | 1.0 | 0.0 |
| JOOOHFCD_84 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_85 | 1.0 | 0.0 | 1.0 |
| JOOOHFCD_93 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JOOOHFCD_22 | 3745 | 28453 | False | Siphoviridae | VOG9126, VOG4581, VOG1886, VOG0202, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG4373 |
| JOOOHFCD_40 | 28271 | 39937 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
| JOOOHFCD_40 | 56124 | 84725 | False | Siphoviridae | VOG0044, VOG0198, VOG5709, VOG5616, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG3463, VOG9657, VOG8438, VOG4334, VOG4705, VOG8868, VOG8294, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)