Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKCOFLKJ_66 | 69231 | 68527 | WalR | 7.17e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PKCOFLKJ_34 | 141167 | 141361 | CspR | 6.85e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PKCOFLKJ_34 | 141167 | 141364 | CspA | 1.05e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PKCOFLKJ_57 | 278 | 1231 | repUS64 | 954 / 954 | 97.90 | JN601038 |
| PKCOFLKJ_30 | 23622 | 24166 | rep38 | 550 / 903 | 89.64 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKCOFLKJ_1 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_2 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_3 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_4 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_5 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_6 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_7 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_8 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_9 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_10 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_11 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_12 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_13 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_14 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_15 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_16 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_17 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_18 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_19 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_20 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_21 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_22 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_23 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_24 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_25 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_26 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_27 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_28 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_29 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_30 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_31 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_32 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_33 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_34 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_35 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_36 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_37 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_38 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_39 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_40 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_41 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_42 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_43 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_44 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_45 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_46 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_47 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_48 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_49 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_50 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_51 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_52 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_54 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_55 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_56 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_57 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_59 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_60 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_61 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_62 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_63 | 1.0 | 0.0 | 1.0 |
| PKCOFLKJ_66 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_77 | 0.0 | 1.0 | 0.0 |
| PKCOFLKJ_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PKCOFLKJ_12 | 3200 | 28695 | False | Siphoviridae | VOG0796, VOG10227, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637, VOG0054 |
| PKCOFLKJ_14 | 3306 | 28532 | False | Siphoviridae | VOG5616, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG8704, VOG8438, VOG4612, VOG4334, VOG4705, VOG9226, VOG0136, VOG8294, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)