Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 1 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PELHHMPC_83 | 9790 | 11205 | STER_RS05250 | 0.0 | Capsule | Immune modulation | 95.20 | 100.00 | WP_011681165 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PELHHMPC_89 | 49154 | 48450 | WalR | 1.00e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PELHHMPC_2 | 72599 | 72405 | CspR | 3.35e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PELHHMPC_2 | 72599 | 72402 | CspA | 5.13e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PELHHMPC_112 | 1965 | 2999 | rep38 | 1046 / 1104 | 82.50 | CP002655 |
| PELHHMPC_105 | 4883 | 5845 | repUS73 | 979 / 1101 | 80.18 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PELHHMPC_1 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_2 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_3 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_4 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_5 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_6 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_7 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_8 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_9 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_13 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_24 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_34 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_45 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_51 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_52 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_53 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_54 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_55 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_56 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_57 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_58 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_59 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_60 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_61 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_62 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_63 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_64 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_65 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_66 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_67 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_68 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_69 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_70 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_71 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_72 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_73 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_74 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_75 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_76 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_77 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_78 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_79 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_80 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_81 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_82 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_83 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_84 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_85 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_86 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_87 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_88 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_89 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_90 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_91 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_92 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_93 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_94 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_95 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_96 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_97 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_98 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_99 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_100 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_101 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_102 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_103 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_104 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_105 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_106 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_107 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_108 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_109 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_110 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_111 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_112 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_113 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_114 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_115 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_116 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_117 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_118 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_120 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_121 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_122 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_123 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_124 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_125 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_126 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_127 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_128 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_129 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_130 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_131 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_132 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_133 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_134 | 0.0 | 1.0 | 0.0 |
| PELHHMPC_136 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_137 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_138 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_139 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_140 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_141 | 1.0 | 0.0 | 1.0 |
| PELHHMPC_142 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PELHHMPC_1 | 85566 | 106079 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG1347, VOG7508, VOG4602, VOG4052, VOG4602, VOG9667, VOG2786, VOG0181 |
| PELHHMPC_1 | 113510 | 136356 | False | Siphoviridae | VOG0686, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG0724, VOG0799, VOG0725, VOG4545, VOG4633, VOG4828, VOG4619, VOG4856, VOG0787, VOG0804, VOG4705, VOG10065, VOG4705 |
| PELHHMPC_121 | 13788 | 40707 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG4570, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)