Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GHFFDFOM_45 | 218563 | 217859 | WalR | 1.36e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GHFFDFOM_30 | 15940 | 15746 | CspR | 1.04e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GHFFDFOM_30 | 15940 | 15743 | CspA | 1.60e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GHFFDFOM_60 | 332 | 1234 | rep38 | 903 / 903 | 99.45 | CP005943 |
| GHFFDFOM_38 | 6657 | 7757 | repUS73 | 1101 / 1101 | 94.46 | CP002654 |
| GHFFDFOM_51 | 144 | 1079 | rep28 | 937 / 936 | 82.07 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHFFDFOM_1 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_2 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_12 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_15 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_16 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_17 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_18 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_19 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_20 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_21 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_22 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_23 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_24 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_25 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_26 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_27 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_28 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_29 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_30 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_31 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_32 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_33 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_34 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_35 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_36 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_37 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_38 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_39 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_40 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_41 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_42 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_43 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_44 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_45 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_46 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_47 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_48 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_49 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_50 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_51 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_52 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_53 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_54 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_55 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_56 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_57 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_58 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_59 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_60 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_61 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_62 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_63 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_64 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_65 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_66 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_67 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_68 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_69 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_70 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_72 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_73 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_74 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_75 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_76 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_77 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_79 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_80 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_81 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_82 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_83 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_84 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_85 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_86 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_87 | 1.0 | 0.0 | 1.0 |
| GHFFDFOM_88 | 0.0 | 1.0 | 0.0 |
| GHFFDFOM_99 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHFFDFOM_1 | 69341 | 97304 | False | Siphoviridae | VOG0189, VOG6005, VOG0198, VOG4841, VOG0741, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG8239, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG4918 |
| GHFFDFOM_34 | 52508 | 77530 | False | Siphoviridae | VOG0044, VOG3643, VOG1049, VOG0198, VOG3381, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)