Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DJNDBEJJ_7 | 54920 | 55624 | WalR | 3.63e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| DJNDBEJJ_33 | 47547 | 47353 | CspR | 1.31e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| DJNDBEJJ_33 | 47547 | 47350 | CspA | 2.00e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DJNDBEJJ_17 | 10466 | 11395 | rep28 | 930 / 930 | 97.74 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DJNDBEJJ_1 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_2 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_3 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_4 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_5 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_6 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_7 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_8 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_9 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_10 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_11 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_12 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_13 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_14 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_15 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_16 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_17 | 1.0 | 0.0 | 1.0 |
| DJNDBEJJ_18 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_21 | 1.0 | 0.0 | 1.0 |
| DJNDBEJJ_22 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_33 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_36 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_37 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_38 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_39 | 0.0 | 1.0 | 0.0 |
| DJNDBEJJ_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DJNDBEJJ_1 | 126620 | 151560 | False | Siphoviridae | VOG0198, VOG4841, VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
| DJNDBEJJ_2 | 66374 | 99603 | False | Siphoviridae | VOG9667, VOG3622, VOG6139, VOG8615, VOG3547, VOG3549, VOG0650, VOG1309, VOG0186, VOG4855, VOG0189, VOG4693, VOG0586, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG1637, VOG0054 |
| DJNDBEJJ_6 | 18428 | 39094 | False | Siphoviridae | VOG4918, VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| DJNDBEJJ_10 | 10822 | 34240 | False | Siphoviridae | VOG10251, VOG1467, VOG4868, VOG4904, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0638, VOG0788, VOG0198, VOG11003, VOG5039 |
Phigaro v2.4.0 (Database: Jan. 2024 release)