Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MCNPDELC_16 | 74231 | 73527 | WalR | 8.15e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| MCNPDELC_35 | 230568 | 230762 | CspR | 1.41e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MCNPDELC_35 | 230568 | 230765 | CspA | 2.16e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MCNPDELC_45 | 13144 | 14044 | rep38 | 901 / 903 | 95.12 | CP005943 |
| MCNPDELC_34 | 3604 | 4539 | rep28 | 938 / 936 | 81.98 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MCNPDELC_1 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_3 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_4 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_6 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_7 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_8 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_9 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_11 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_13 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_15 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_16 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_18 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_20 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_21 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_22 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_23 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_25 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_27 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_30 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_32 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_34 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_35 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_37 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_40 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_41 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_42 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_43 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_44 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_45 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_46 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_47 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_48 | 1.0 | 0.0 | 1.0 |
| MCNPDELC_51 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_52 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_56 | 0.0 | 1.0 | 0.0 |
| MCNPDELC_58 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MCNPDELC_7 | 30966 | 62368 | False | Siphoviridae | VOG4548, VOG9667, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG1298, VOG10015, VOG0044, VOG2602, VOG6179, VOG0198, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917, VOG1637 |
| MCNPDELC_13 | 149014 | 182568 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG0638, VOG0788, VOG0198, VOG11003, VOG5039, VOG4693, VOG4566 |
| MCNPDELC_27 | 6359 | 17959 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
| MCNPDELC_52 | 9085 | 35431 | False | Siphoviridae | VOG3643, VOG0198, VOG3381, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG1637, VOG0054, VOG0713 |
Phigaro v2.4.0 (Database: Jan. 2024 release)