Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMHAMGGE_18 | 259302 | 258598 | WalR | 2.20e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PMHAMGGE_22 | 91564 | 91370 | CspR | 7.64e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PMHAMGGE_22 | 91564 | 91367 | CspA | 1.17e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PMHAMGGE_16 | 24304 | 25206 | rep38 | 903 / 903 | 99.00 | CP005943 |
| PMHAMGGE_33 | 869 | 1798 | rep28 | 930 / 930 | 98.17 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMHAMGGE_1 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_2 | 1.0 | 0.0 | 1.0 |
| PMHAMGGE_3 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_5 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_7 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_9 | 1.0 | 0.0 | 1.0 |
| PMHAMGGE_15 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_16 | 1.0 | 0.0 | 1.0 |
| PMHAMGGE_18 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_19 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_20 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_21 | 1.0 | 0.0 | 1.0 |
| PMHAMGGE_22 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_23 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_24 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_26 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_27 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_28 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_29 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_30 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_32 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_33 | 1.0 | 0.0 | 1.0 |
| PMHAMGGE_34 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_35 | 0.0 | 1.0 | 0.0 |
| PMHAMGGE_40 | 1.0 | 0.0 | 1.0 |
| PMHAMGGE_41 | 1.0 | 0.0 | 1.0 |
| PMHAMGGE_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMHAMGGE_18 | 261061 | 271131 | False | Siphoviridae | VOG0204, VOG4553, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609 |
| PMHAMGGE_27 | 363517 | 387474 | False | Siphoviridae | VOG3443, VOG1191, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6154 |
| PMHAMGGE_27 | 390953 | 403533 | False | Siphoviridae | VOG0044, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG8925, VOG0181, VOG8222, VOG1563, VOG8520, VOG4602, VOG9326 |
| PMHAMGGE_34 | 151746 | 178002 | False | Siphoviridae | VOG0189, VOG6005, VOG0198, VOG4841, VOG0741, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG8239, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870 |
Phigaro v2.4.0 (Database: Jan. 2024 release)