Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GKOLBNNB_2 | 33105 | 33809 | WalR | 2.47e-111 | transcriptional regulatory protein | 82.98 | 100.00 | EPH95667 |
| GKOLBNNB_6 | 14260 | 14063 | CspR | 9.53e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKOLBNNB_1 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_2 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_3 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_4 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_5 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_6 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_7 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_8 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_9 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_10 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_11 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_12 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_13 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_14 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_15 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_16 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_17 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_18 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_19 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_20 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_21 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_22 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_23 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_24 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_25 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_26 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_27 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_28 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_29 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_30 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_31 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_32 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_33 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_34 | 1.0 | 0.0 | 1.0 |
| GKOLBNNB_35 | 1.0 | 0.0 | 1.0 |
| GKOLBNNB_36 | 1.0 | 0.0 | 1.0 |
| GKOLBNNB_37 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_38 | 1.0 | 0.0 | 1.0 |
| GKOLBNNB_39 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_40 | 0.0 | 1.0 | 0.0 |
| GKOLBNNB_41 | 1.0 | 0.0 | 1.0 |
| GKOLBNNB_43 | 1.0 | 0.0 | 1.0 |
| GKOLBNNB_45 | 1.0 | 0.0 | 1.0 |
| GKOLBNNB_46 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKOLBNNB_8 | 52407 | 75202 | False | Siphoviridae | VOG4581, VOG1886, VOG4556, VOG4568, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4605, VOG4599, VOG6455, VOG7896, VOG0753, VOG0703, VOG8294, VOG6495 |
| GKOLBNNB_10 | 80998 | 117904 | False | Siphoviridae | VOG4918, VOG0638, VOG0054, VOG1637, VOG4705, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG1345, VOG4549, VOG4570, VOG0198, VOG0044, VOG3643, VOG6470, VOG2820, VOG0195, VOG9759, VOG4606, VOG6545, VOG3777, VOG4548, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552 |
| GKOLBNNB_24 | 2435 | 36698 | False | Siphoviridae | VOG4649, VOG0054, VOG7888, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG5616, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG4570, VOG7136, VOG0198, VOG6815, VOG2820, VOG4643, VOG0275, VOG0195, VOG0536, VOG9860, VOG9667, VOG11003, VOG0226, VOG4566, VOG0186, VOG1309, VOG8241 |
Phigaro v2.4.0 (Database: Jan. 2024 release)