Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FPGDBJPA_1 | 171208 | 170504 | WalR | 2.80e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| FPGDBJPA_7 | 39337 | 39534 | CspR | 6.25e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FPGDBJPA_1 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_2 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_3 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_4 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_5 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_6 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_7 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_8 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_9 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_10 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_11 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_12 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_13 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_14 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_15 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_16 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_17 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_18 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_19 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_20 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_21 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_22 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_23 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_24 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_25 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_26 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_27 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_28 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_29 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_30 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_31 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_32 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_33 | 1.0 | 0.0 | 1.0 |
| FPGDBJPA_34 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_35 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_36 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_37 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_38 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_39 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_40 | 1.0 | 0.0 | 1.0 |
| FPGDBJPA_41 | 1.0 | 0.0 | 1.0 |
| FPGDBJPA_42 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_43 | 0.0 | 1.0 | 0.0 |
| FPGDBJPA_45 | 1.0 | 0.0 | 1.0 |
| FPGDBJPA_47 | 1.0 | 0.0 | 1.0 |
| FPGDBJPA_48 | 1.0 | 0.0 | 1.0 |
| FPGDBJPA_49 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FPGDBJPA_10 | 82482 | 98578 | False | Siphoviridae | VOG0275, VOG6495, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586 |
| FPGDBJPA_19 | 37458 | 48005 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| FPGDBJPA_26 | 27404 | 38528 | False | Unknown | VOG2406, VOG2070, VOG0275, VOG4585, VOG7537 |
| FPGDBJPA_28 | 471 | 37903 | False | Siphoviridae | VOG4918, VOG0054, VOG7888, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG0198, VOG0044, VOG3643, VOG3643, VOG2820, VOG9759, VOG4813, VOG4693, VOG7735, VOG0025, VOG4799, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG3459, VOG3711, VOG4552, VOG6463 |
Phigaro v2.4.0 (Database: Jan. 2024 release)