Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LBFMGJOF_5 | 122869 | 122165 | WalR | 2.06e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LBFMGJOF_2 | 252741 | 252938 | CspR | 1.60e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LBFMGJOF_21 | 14237 | 14794 | rep38 | 564 / 903 | 81.91 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBFMGJOF_1 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_2 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_3 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_4 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_5 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_6 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_7 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_8 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_9 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_10 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_11 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_12 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_13 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_14 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_15 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_16 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_17 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_18 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_19 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_20 | 1.0 | 0.0 | 1.0 |
| LBFMGJOF_21 | 1.0 | 0.0 | 1.0 |
| LBFMGJOF_22 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_23 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_24 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_25 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_26 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_27 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_28 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_29 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_30 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_31 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_32 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_33 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_34 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_35 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_36 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_37 | 1.0 | 0.0 | 1.0 |
| LBFMGJOF_38 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_39 | 1.0 | 0.0 | 1.0 |
| LBFMGJOF_40 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_41 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_42 | 1.0 | 0.0 | 1.0 |
| LBFMGJOF_43 | 1.0 | 0.0 | 1.0 |
| LBFMGJOF_45 | 0.0 | 1.0 | 0.0 |
| LBFMGJOF_46 | 1.0 | 0.0 | 1.0 |
| LBFMGJOF_47 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBFMGJOF_1 | 318673 | 329183 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG1886, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632, VOG1581 |
| LBFMGJOF_2 | 276164 | 286378 | False | Unknown | VOG1309, VOG0186, VOG4566, VOG0189, VOG9860, VOG0536, VOG4567, VOG0044, VOG0198, VOG4570 |
| LBFMGJOF_13 | 68144 | 76403 | False | Siphoviridae | VOG7888, VOG4599, VOG4605 |
| LBFMGJOF_25 | 285 | 21471 | False | Siphoviridae | VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG5616, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG4570, VOG7136, VOG0198, VOG3643, VOG0152, VOG9759, VOG9741, VOG4693, VOG6623, VOG9860, VOG11003, VOG1638, VOG6238, VOG4566, VOG0186, VOG1309 |
| LBFMGJOF_28 | 819 | 12406 | False | Siphoviridae | VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG4705, VOG0861, VOG7017, VOG0602, VOG0638 |
Phigaro v2.4.0 (Database: Jan. 2024 release)