Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PNMHHDAG_7 | 65812 | 65108 | WalR | 1.36e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| PNMHHDAG_1 | 18712 | 18909 | CspR | 9.43e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNMHHDAG_1 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_2 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_3 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_4 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_5 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_6 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_7 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_8 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_9 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_10 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_11 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_12 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_13 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_14 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_15 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_16 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_17 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_18 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_19 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_20 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_21 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_22 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_23 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_24 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_25 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_26 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_27 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_28 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_29 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_30 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_31 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_32 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_33 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_34 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_35 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_36 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_37 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_38 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_39 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_40 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_41 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_42 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_43 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_44 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_45 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_46 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_47 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_48 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_49 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_50 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_51 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_52 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_53 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_54 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_55 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_56 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_57 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_58 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_59 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_60 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_61 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_62 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_63 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_64 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_65 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_66 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_67 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_68 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_69 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_70 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_71 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_72 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_73 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_74 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_75 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_76 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_77 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_78 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_79 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_80 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_81 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_83 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_84 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_85 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_86 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_87 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_88 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_90 | 0.0 | 1.0 | 0.0 |
| PNMHHDAG_91 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_92 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_93 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_94 | 1.0 | 0.0 | 1.0 |
| PNMHHDAG_95 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PNMHHDAG_1 | 41285 | 74875 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG0226, VOG11003, VOG9667, VOG9860, VOG6623, VOG4693, VOG9741, VOG9759, VOG2820, VOG6131, VOG3643, VOG3643, VOG0198, VOG4570, VOG10904, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0054, VOG4918 |
| PNMHHDAG_11 | 58257 | 73153 | False | Siphoviridae | VOG0275, VOG6495, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG4599, VOG4605, VOG4605, VOG6163, VOG0660 |
Phigaro v2.4.0 (Database: Jan. 2024 release)