Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FADDGFJE_2 | 33104 | 33808 | WalR | 2.25e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| FADDGFJE_1 | 186443 | 186640 | CspR | 1.11e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FADDGFJE_1 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_2 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_3 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_4 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_5 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_6 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_7 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_8 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_9 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_10 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_11 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_12 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_13 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_14 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_15 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_16 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_17 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_18 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_19 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_20 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_21 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_22 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_23 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_24 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_25 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_26 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_27 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_28 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_29 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_30 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_31 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_32 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_33 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_34 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_35 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_36 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_37 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_38 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_39 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_40 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_41 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_42 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_43 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_44 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_45 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_46 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_47 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_48 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_49 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_50 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_51 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_52 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_53 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_54 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_55 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_56 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_57 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_58 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_59 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_60 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_61 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_62 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_63 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_65 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_66 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_67 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_68 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_69 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_70 | 0.0 | 1.0 | 0.0 |
| FADDGFJE_71 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_72 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_74 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_75 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_76 | 1.0 | 0.0 | 1.0 |
| FADDGFJE_77 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FADDGFJE_1 | 104092 | 117953 | False | Siphoviridae | VOG1581, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| FADDGFJE_6 | 16907 | 26681 | False | Unknown | VOG7537, VOG4585, VOG0275, VOG2070 |
| FADDGFJE_9 | 52580 | 63414 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG1581 |
| FADDGFJE_28 | 2572 | 42341 | False | Siphoviridae | VOG6914, VOG9667, VOG3622, VOG4552, VOG4552, VOG3711, VOG3459, VOG0181, VOG10867, VOG3642, VOG4799, VOG0025, VOG7735, VOG7018, VOG6623, VOG4693, VOG4567, VOG0195, VOG0634, VOG3643, VOG0198, VOG7136, VOG4570, VOG10904, VOG4549, VOG1345, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG4705, VOG7888, VOG0054, VOG4918 |
| FADDGFJE_37 | 20385 | 27268 | False | Unknown | VOG6495, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455 |
Phigaro v2.4.0 (Database: Jan. 2024 release)