Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CPDHPNJE_1 | 171217 | 170513 | WalR | 2.80e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CPDHPNJE_9 | 7679 | 7876 | CspR | 3.74e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
| CPDHPNJE_53 | 120 | 797 | OadB | 1.29e-114 | Na+ membrane pump | 80.97 | 62.60 | AAX97432 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CPDHPNJE_24 | 23912 | 24970 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPDHPNJE_1 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_2 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_3 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_4 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_5 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_6 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_7 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_8 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_9 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_10 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_11 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_12 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_13 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_14 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_15 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_16 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_17 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_18 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_19 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_20 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_21 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_22 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_23 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_24 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_25 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_26 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_27 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_28 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_29 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_30 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_31 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_32 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_33 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_34 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_35 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_36 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_37 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_38 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_39 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_40 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_41 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_42 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_43 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_44 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_45 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_46 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_47 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_48 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_49 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_50 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_51 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_52 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_53 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_54 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_55 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_56 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_57 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_58 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_59 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_60 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_61 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_62 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_63 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_64 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_65 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_66 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_67 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_68 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_69 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_70 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_71 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_72 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_73 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_74 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_75 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_76 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_77 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_78 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_79 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_80 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_81 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_82 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_83 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_84 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_85 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_86 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_87 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_88 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_89 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_90 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_91 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_93 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_94 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_96 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_97 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_98 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_99 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_100 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_102 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_103 | 0.0 | 1.0 | 0.0 |
| CPDHPNJE_104 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_105 | 1.0 | 0.0 | 1.0 |
| CPDHPNJE_106 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)