Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GCDILJNI_3 | 33329 | 34033 | WalR | 1.36e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GCDILJNI_5 | 50992 | 50795 | CspR | 5.18e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCDILJNI_1 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_2 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_3 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_4 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_5 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_6 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_7 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_8 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_9 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_10 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_11 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_12 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_13 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_14 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_15 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_16 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_17 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_18 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_19 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_20 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_21 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_22 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_23 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_24 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_25 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_26 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_27 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_28 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_29 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_30 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_31 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_32 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_33 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_34 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_35 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_36 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_37 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_38 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_39 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_40 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_41 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_42 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_43 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_44 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_45 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_46 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_47 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_48 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_49 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_50 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_51 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_52 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_53 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_54 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_55 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_56 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_57 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_58 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_59 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_60 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_61 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_62 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_63 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_64 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_65 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_66 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_67 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_68 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_69 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_70 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_71 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_72 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_73 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_74 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_75 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_76 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_77 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_78 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_79 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_80 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_81 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_82 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_83 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_84 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_85 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_87 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_88 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_89 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_90 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_91 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_92 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_93 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_94 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_95 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_96 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_98 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_99 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_100 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_101 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_102 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_103 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_104 | 1.0 | 0.0 | 1.0 |
| GCDILJNI_105 | 0.0 | 1.0 | 0.0 |
| GCDILJNI_106 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GCDILJNI_5 | 3 | 28419 | False | Siphoviridae | VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG10904, VOG4570, VOG0198, VOG3643, VOG3643, VOG6131, VOG2820, VOG9759, VOG9741, VOG4693, VOG6623, VOG9860, VOG9667, VOG11003, VOG0226, VOG4566, VOG0186, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)