Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GIEGGGAE_134 | 65791 | 65087 | WalR | 1.05e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GIEGGGAE_89 | 35491 | 35294 | CspR | 2.98e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIEGGGAE_4 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_6 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_7 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_8 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_9 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_10 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_11 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_12 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_13 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_14 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_15 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_16 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_17 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_18 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_19 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_21 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_22 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_23 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_24 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_25 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_26 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_27 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_28 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_29 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_30 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_31 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_32 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_33 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_34 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_35 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_36 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_37 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_38 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_39 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_40 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_42 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_43 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_44 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_45 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_46 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_48 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_49 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_50 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_51 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_52 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_53 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_54 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_55 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_56 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_57 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_58 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_59 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_60 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_61 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_62 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_63 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_64 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_65 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_66 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_67 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_68 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_69 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_70 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_71 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_72 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_73 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_74 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_77 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_78 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_79 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_80 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_81 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_84 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_85 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_86 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_87 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_88 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_89 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_90 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_91 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_92 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_93 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_94 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_95 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_96 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_97 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_98 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_99 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_101 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_102 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_103 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_104 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_105 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_106 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_107 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_108 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_109 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_110 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_111 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_112 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_113 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_114 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_115 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_117 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_118 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_120 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_121 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_122 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_124 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_125 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_126 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_127 | 0.0 | 1.0 | 0.0 |
| GIEGGGAE_130 | 1.0 | 0.0 | 1.0 |
| GIEGGGAE_134 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GIEGGGAE_89 | 3770 | 12919 | False | Siphoviridae | VOG0198, VOG3643, VOG3643, VOG6131, VOG2820, VOG9759, VOG9741, VOG4693, VOG6623, VOG9860, VOG9667, VOG11003, VOG0226, VOG4566, VOG0186, VOG1309 |
| GIEGGGAE_99 | 20863 | 33497 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG4609, VOG4632, VOG1581 |
Phigaro v2.4.0 (Database: Jan. 2024 release)