Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ALHMOFBD_128 | 5269 | 4565 | WalR | 2.20e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| ALHMOFBD_209 | 6819 | 6622 | CspR | 1.46e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ALHMOFBD_18 | 3281 | 4320 | rep38 | 1051 / 1104 | 80.88 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ALHMOFBD_4 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_5 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_7 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_8 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_9 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_10 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_11 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_14 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_15 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_16 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_17 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_18 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_20 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_21 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_22 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_23 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_24 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_25 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_26 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_27 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_28 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_29 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_30 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_31 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_32 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_33 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_34 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_35 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_36 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_37 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_38 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_39 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_40 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_41 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_42 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_43 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_44 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_45 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_46 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_47 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_48 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_49 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_50 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_51 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_52 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_53 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_54 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_55 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_56 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_57 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_58 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_59 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_60 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_63 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_64 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_65 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_66 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_67 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_68 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_69 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_70 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_71 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_72 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_73 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_74 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_75 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_76 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_77 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_78 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_79 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_80 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_81 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_82 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_83 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_84 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_85 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_86 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_87 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_88 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_91 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_92 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_93 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_94 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_96 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_97 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_98 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_99 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_100 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_101 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_102 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_103 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_104 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_105 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_106 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_107 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_109 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_110 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_111 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_112 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_113 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_114 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_115 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_116 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_117 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_118 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_119 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_120 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_121 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_122 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_123 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_125 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_126 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_128 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_135 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_136 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_137 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_138 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_139 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_140 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_141 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_142 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_143 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_144 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_146 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_147 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_148 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_149 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_150 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_151 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_152 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_153 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_154 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_155 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_156 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_158 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_159 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_160 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_161 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_162 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_163 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_164 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_165 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_166 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_167 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_168 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_169 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_171 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_173 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_174 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_175 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_176 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_177 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_178 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_179 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_180 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_181 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_182 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_183 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_184 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_185 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_186 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_187 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_188 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_189 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_190 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_191 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_192 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_194 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_195 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_196 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_198 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_199 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_201 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_202 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_204 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_205 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_207 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_209 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_210 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_212 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_213 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_214 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_216 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_217 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_218 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_220 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_221 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_222 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_223 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_224 | 1.0 | 0.0 | 1.0 |
| ALHMOFBD_228 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_230 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_232 | 0.0 | 1.0 | 0.0 |
| ALHMOFBD_238 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ALHMOFBD_14 | 3500 | 10976 | False | Unknown | VOG0152, VOG9759, VOG9741, VOG4693, VOG6623, VOG9860, VOG11003, VOG0226, VOG4566, VOG0186, VOG0186, VOG1309, VOG8241 |
| ALHMOFBD_119 | 5982 | 16513 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632, VOG1581 |
| ALHMOFBD_137 | 12741 | 41678 | False | Siphoviridae | VOG4649, VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG5793, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG5699, VOG7136, VOG0198, VOG0044, VOG1298, VOG3643, VOG0982, VOG0189, VOG4799, VOG3642, VOG0181, VOG4552 |
| ALHMOFBD_140 | 456 | 39242 | False | Siphoviridae | VOG4660, VOG4828, VOG4633, VOG0083, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG4549, VOG10904, VOG4570, VOG3691, VOG0198, VOG0044, VOG3643, VOG6470, VOG2820, VOG4643, VOG0275, VOG0195, VOG0536, VOG9860, VOG0189, VOG4566, VOG10904, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG0181, VOG4552, VOG5353, VOG8520, VOG0862, VOG7656, VOG3304 |
Phigaro v2.4.0 (Database: Jan. 2024 release)