Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HBDLOLLJ_25 | 4920 | 4726 | CspA | 1.53e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HBDLOLLJ_1 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_2 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_3 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_4 | 1.0 | 0.0 | 1.0 |
| HBDLOLLJ_5 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_6 | 1.0 | 0.0 | 1.0 |
| HBDLOLLJ_7 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_8 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_9 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_10 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_11 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_12 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_13 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_15 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_16 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_17 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_18 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_19 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_20 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_21 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_22 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_23 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_24 | 1.0 | 0.0 | 1.0 |
| HBDLOLLJ_25 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_26 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_27 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_28 | 1.0 | 0.0 | 1.0 |
| HBDLOLLJ_29 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_30 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_31 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_32 | 1.0 | 0.0 | 1.0 |
| HBDLOLLJ_33 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_34 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_35 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_36 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_37 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_39 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_40 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_41 | 1.0 | 0.0 | 1.0 |
| HBDLOLLJ_42 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_43 | 0.0 | 1.0 | 0.0 |
| HBDLOLLJ_44 | 1.0 | 0.0 | 1.0 |
| HBDLOLLJ_45 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HBDLOLLJ_20 | 2636 | 5693 | False | Siphoviridae | VOG4552, VOG6495, VOG9667, VOG4602, VOG0682 |
| HBDLOLLJ_33 | 8971 | 17676 | False | Siphoviridae | VOG4714, VOG0204, VOG0198, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841 |
| HBDLOLLJ_42 | 120765 | 150339 | False | Siphoviridae | VOG1183, VOG4039, VOG0198, VOG8453, VOG1422, VOG4618, VOG10227, VOG0720, VOG4564, VOG0638, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG10972, VOG3405, VOG9997, VOG4856, VOG4334, VOG4705, VOG7368 |
| HBDLOLLJ_45 | 199007 | 224393 | False | Siphoviridae | VOG5904, VOG0979, VOG4357, VOG0866, VOG4841, VOG4581, VOG9312, VOG0866, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG6163, VOG0801 |
Phigaro v2.4.0 (Database: Jan. 2024 release)