Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CICHBMBM_2 | 43220 | 43924 | WalR | 2.98e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CICHBMBM_91 | 7129 | 7323 | CspR | 4.64e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CICHBMBM_91 | 7129 | 7326 | CspA | 7.12e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CICHBMBM_12 | 18795 | 19895 | repUS73 | 1102 / 1101 | 91.92 | CP002654 |
| CICHBMBM_3 | 647 | 1582 | rep28 | 943 / 936 | 83.56 | CP005948 |
| CICHBMBM_49 | 19041 | 20070 | rep38 | 1039 / 1104 | 82.58 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CICHBMBM_1 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_2 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_3 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_7 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_8 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_9 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_10 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_11 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_12 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_13 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_14 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_16 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_17 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_18 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_19 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_20 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_21 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_22 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_23 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_24 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_25 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_26 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_27 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_28 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_29 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_30 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_31 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_32 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_33 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_34 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_35 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_36 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_37 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_38 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_39 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_40 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_41 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_42 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_43 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_44 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_45 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_46 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_47 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_48 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_49 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_50 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_51 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_52 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_53 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_54 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_55 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_56 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_57 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_58 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_59 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_60 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_61 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_62 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_63 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_64 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_65 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_66 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_67 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_68 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_69 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_70 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_71 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_72 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_73 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_74 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_75 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_76 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_77 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_78 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_79 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_80 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_81 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_82 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_83 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_84 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_88 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_91 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_92 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_93 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_94 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_95 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_96 | 0.0 | 1.0 | 0.0 |
| CICHBMBM_97 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_98 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_99 | 1.0 | 0.0 | 1.0 |
| CICHBMBM_101 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CICHBMBM_2 | 31102 | 41978 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204 |
| CICHBMBM_37 | 6779 | 19642 | False | Siphoviridae | VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG7416, VOG0044, VOG10015 |
| CICHBMBM_63 | 7144 | 19834 | False | Siphoviridae | VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG7481, VOG0198, VOG4010, VOG0044, VOG6970 |
Phigaro v2.4.0 (Database: Jan. 2024 release)